SMTL ID : 2d44.1

Crystal structure of arabinofuranosidase complexed with arabinofuranosyl-alpha-1,2-xylobiose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: D.157, N.185, T.187, T.412, K.413 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.413

2 x XYS- XYS- AHR: alpha-L-arabinofuranose-(1-2)-alpha-D-xylopyranose-(1-4)-alpha-D-xylopyranose

XYS-XYS-AHR.2: 10 residues within 4Å: Chain A: P.95, P.125, G.126, H.399, Y.400, N.401, F.402, Q.414, D.418, Y.439 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.398, A:H.399, A:N.401, A:F.402, A:Q.414, A:D.418 XYS-XYS-AHR.3: 9 residues within 4Å: Chain A: T.339, Y.342, R.445, H.446, Y.447, E.448, N.449, S.467, D.471 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.445, A:H.446, A:E.448, A:N.449, A:N.449, A:S.467, A:D.471, A:Y.342 Water bridges: A:T.356, A:S.464

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miyanaga, A. et al., The family 42 carbohydrate-binding module of family 54 alpha-L-arabinofuranosidase specifically binds the arabinofuranose side chain of hemicellulose. Biochem.J. (2006)

Release Date

2006-09-19

Peptides

alpha-L-arabinofuranosidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

alpha-L-arabinofuranosidase B

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