SMTL ID : 2d4q.1

Crystal structure of the Sec-PH domain of the human neurofibromatosis type 1 protein

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

2 x OXN: OXTOXYNOL-10(Non-covalent)

OXN.1: 9 residues within 4Å: Chain A: Y.28, I.61, N.72, R.73, F.74, W.82, F.86, Y.91, Y.109 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.74, A:Y.109 OXN.2: 12 residues within 4Å: Chain B: Y.28, L.51, I.61, V.63, L.65, N.72, R.73, F.74, W.82, Y.91, V.94, Y.109 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:Y.28, B:V.63, B:L.65, B:F.74

2 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.3: 2 residues within 4Å: Chain B: R.107, K.111 5 PLIP interactions: 5 interactions with chain B Salt bridges: B:R.107, B:K.111, B:K.111, B:K.169, B:K.169 POP.4: 5 residues within 4Å: Chain B: R.73, K.75, T.76, Y.112, H.113 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.76, B:T.76 Salt bridges: B:R.73

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

D'angelo, I. et al., A novel bipartite phospholipid-binding module in the neurofibromatosis type 1 protein. Embo Rep. (2006)

Release Date

2006-03-07

Peptides

Neurofibromin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Neurofibromin