SMTL ID : 2d69.1 (3 other biounits)

Crystal structure of the complex of sulfate ion and octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Pyrococcus horikoshii OT3 (form-2 crystal)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-octamer

Ligands

38 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: K.160, G.349, G.350, Q.370, A.371, G.372, G.373 Ligand excluded by PLIP SO4.2: 3 residues within 4Å: Chain A: R.279, H.311, M.319 Ligand excluded by PLIP SO4.3: 5 residues within 4Å: Chain A: Y.31, H.78, R.119, L.121, P.289 Ligand excluded by PLIP SO4.4: 5 residues within 4Å: Chain A: G.148, V.149, K.150, D.151, R.152 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: K.205, R.208, V.209, R.212 Ligand excluded by PLIP SO4.6: 7 residues within 4Å: Chain B: K.160, G.349, G.350, Q.370, A.371, G.372, G.373 Ligand excluded by PLIP SO4.7: 3 residues within 4Å: Chain B: R.279, H.311, S.348 Ligand excluded by PLIP SO4.8: 5 residues within 4Å: Chain B: Y.31, H.78, R.119, L.121, P.289 Ligand excluded by PLIP SO4.9: 4 residues within 4Å: Chain B: G.148, V.149, R.152, R.390 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain B: K.205, R.208, V.209, R.212 Ligand excluded by PLIP SO4.11: 7 residues within 4Å: Chain C: K.160, G.349, G.350, Q.370, A.371, G.372, G.373 Ligand excluded by PLIP SO4.12: 2 residues within 4Å: Chain C: R.279, H.311 Ligand excluded by PLIP SO4.13: 4 residues within 4Å: Chain C: Y.31, H.78, R.119, P.289 Ligand excluded by PLIP SO4.14: 4 residues within 4Å: Chain C: G.148, V.149, K.150, R.152 Ligand excluded by PLIP SO4.15: 7 residues within 4Å: Chain D: K.160, G.349, G.350, Q.370, A.371, G.372, G.373 Ligand excluded by PLIP SO4.16: 3 residues within 4Å: Chain D: R.279, H.311, S.348 Ligand excluded by PLIP SO4.17: 5 residues within 4Å: Chain D: Y.31, H.78, R.119, L.121, P.289 Ligand excluded by PLIP SO4.18: 5 residues within 4Å: Chain D: G.148, V.149, K.150, D.151, R.152 Ligand excluded by PLIP SO4.19: 5 residues within 4Å: Chain D: K.205, R.208, V.209, R.212 Chain F: E.145 Ligand excluded by PLIP SO4.20: 7 residues within 4Å: Chain E: K.160, G.349, G.350, Q.370, A.371, G.372, G.373 Ligand excluded by PLIP SO4.21: 3 residues within 4Å: Chain E: R.279, H.311, M.319 Ligand excluded by PLIP SO4.22: 5 residues within 4Å: Chain E: Y.31, H.78, R.119, L.121, P.289 Ligand excluded by PLIP SO4.23: 5 residues within 4Å: Chain E: G.148, V.149, K.150, D.151, R.152 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain E: K.205, R.208, V.209, R.212 Ligand excluded by PLIP SO4.25: 7 residues within 4Å: Chain F: K.160, G.349, G.350, Q.370, A.371, G.372, G.373 Ligand excluded by PLIP SO4.26: 3 residues within 4Å: Chain F: R.279, H.311, S.348 Ligand excluded by PLIP SO4.27: 5 residues within 4Å: Chain F: Y.31, H.78, R.119, L.121, P.289 Ligand excluded by PLIP SO4.28: 4 residues within 4Å: Chain F: G.148, V.149, R.152, R.390 Ligand excluded by PLIP SO4.29: 4 residues within 4Å: Chain F: K.205, R.208, V.209, R.212 Ligand excluded by PLIP SO4.30: 7 residues within 4Å: Chain G: K.160, G.349, G.350, Q.370, A.371, G.372, G.373 Ligand excluded by PLIP SO4.31: 2 residues within 4Å: Chain G: R.279, H.311 Ligand excluded by PLIP SO4.32: 4 residues within 4Å: Chain G: Y.31, H.78, R.119, P.289 Ligand excluded by PLIP SO4.33: 4 residues within 4Å: Chain G: G.148, V.149, K.150, R.152 Ligand excluded by PLIP SO4.34: 7 residues within 4Å: Chain H: K.160, G.349, G.350, Q.370, A.371, G.372, G.373 Ligand excluded by PLIP SO4.35: 3 residues within 4Å: Chain H: R.279, H.311, S.348 Ligand excluded by PLIP SO4.36: 5 residues within 4Å: Chain H: Y.31, H.78, R.119, L.121, P.289 Ligand excluded by PLIP SO4.37: 5 residues within 4Å: Chain H: G.148, V.149, K.150, D.151, R.152 Ligand excluded by PLIP SO4.38: 5 residues within 4Å: Chain B: E.145 Chain H: K.205, R.208, V.209, R.212 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mizohata, E. et al., Crystal structure of the complex of sulfate ion and octameric ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) from Pyrococcus horikoshii OT3 (form-2 crystal). To be Published

Release Date

2006-05-10

Peptides

Ribulose bisphosphate carboxylase: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

D
E

E
A

F
B

G
D

H
E

Ribulose bisphosphate carboxylase

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