SMTL ID : 2d6p.1

Crystal structure of mouse galectin-9 N-terminal CRD in complex with T-antigen

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x NGA- GAL: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose(Non-covalent)

NGA-GAL.1: 8 residues within 4Å: Chain A: R.45, H.62, N.64, R.66, N.76, W.83, E.86, R.88 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.45, A:R.66, A:N.76, A:R.66, A:R.66, A:E.86, A:R.88 NGA-GAL.2: 8 residues within 4Å: Chain B: R.45, H.62, N.64, R.66, N.76, W.83, E.86, R.88 7 PLIP interactions: 6 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:N.64, B:R.66, B:N.76, B:E.86, B:R.45, B:R.66, B:R.66, B:E.86, B:R.88 Water bridges: B:Y.72, A:M.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nagae, M. et al., Crystal Structure of the Galectin-9 N-terminal Carbohydrate Recognition Domain from Mus musculus Reveals the Basic Mechanism of Carbohydrate Recognition. J.Biol.Chem. (2006)

Release Date

2006-09-26

Peptides

lectin, galactose binding, soluble 9: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

lectin, galactose binding, soluble 9

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