SMTL ID : 2d7c.1 (1 other biounit)

Crystal structure of human Rab11 in complex with FIP3 Rab-binding domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

hetero-1-1-mer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.19, T.37, D.60 Ligands: GTP.2 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.19, A:T.37, H2O.2, H2O.2

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.2: 24 residues within 4Å: Chain A: D.13, S.14, G.15, V.16, G.17, K.18, S.19, N.20, F.30, N.31, L.32, S.34, S.36, T.37, A.62, G.63, N.118, K.119, D.121, L.122, S.148, A.149, L.150 Ligands: MG.1 26 PLIP interactions: 26 interactions with chain A Hydrogen bonds: A:G.15, A:V.16, A:G.17, A:K.18, A:S.19, A:N.20, A:N.20, A:N.31, A:S.34, A:T.37, A:T.37, A:T.61, A:G.63, A:N.118, A:K.119, A:K.119, A:A.149, A:L.150 Water bridges: A:S.19, A:S.19, A:L.32, A:S.34 Salt bridges: A:K.18, A:K.18, A:D.121 pi-Stacking: A:F.30

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.3: 5 residues within 4Å: Chain A: E.97, L.100, K.101, F.136, N.140 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.140 Water bridges: A:K.139, A:K.139 Salt bridges: A:E.97, A:K.139

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shiba, T. et al., Structural basis for Rab11-dependent membrane recruitment of a family of Rab11-interacting protein 3 (FIP3)/Arfophilin-1. Proc.Natl.Acad.Sci.Usa (2006)

Release Date

2006-09-26

Peptides

Ras-related protein Rab-11A: A
Rab11 family-interacting protein 3: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Ras-related protein Rab-11A

Rab11 family-interacting protein 3

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