- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.31 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MMA: methyl alpha-D-mannopyranoside(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 4 residues within 4Å:- Chain A: E.8, D.10, D.19, H.24
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:E.8, A:D.10, A:D.19, A:H.24
MN.6: 4 residues within 4Å:- Chain B: E.8, D.10, D.19, H.24
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:E.8, B:D.10, B:D.19, B:H.24
MN.10: 4 residues within 4Å:- Chain C: E.8, D.10, D.19, H.24
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:E.8, C:D.10, C:D.19, C:H.24
MN.14: 4 residues within 4Å:- Chain D: E.8, D.10, D.19, H.24
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:E.8, D:D.10, D:D.19, D:H.24
- 4 x CA: CALCIUM ION(Non-covalent)
CA.3: 4 residues within 4Å:- Chain A: D.10, Y.12, N.14, D.19
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.10, A:D.10, A:Y.12, A:D.19
CA.7: 4 residues within 4Å:- Chain B: D.10, Y.12, N.14, D.19
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.10, B:D.10, B:Y.12, B:D.19
CA.11: 4 residues within 4Å:- Chain C: D.10, Y.12, N.14, D.19
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:D.10, C:D.10, C:Y.12, C:D.19
CA.15: 4 residues within 4Å:- Chain D: D.10, Y.12, N.14, D.19
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:D.10, D:D.10, D:Y.12, D:D.19
- 4 x DBB: D-ALPHA-AMINOBUTYRIC ACID(Non-covalent)
DBB.4: 10 residues within 4Å:- Chain A: S.113, N.124, A.125, L.126, V.179, H.180
- Chain B: M.129, F.130, Q.137, D.139
6 PLIP interactions:1 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:Q.137, A:N.124, A:N.124
- Hydrophobic interactions: A:L.126, A:V.179, A:H.180
DBB.8: 9 residues within 4Å:- Chain A: M.129, F.130, D.139
- Chain B: S.113, K.114, A.125, L.126, V.179, H.180
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:D.139, A:D.139, B:H.180
- Water bridges: A:Q.137, B:N.124
DBB.12: 10 residues within 4Å:- Chain C: S.113, N.124, A.125, L.126, V.179, H.180
- Chain D: M.129, F.130, Q.137, D.139
6 PLIP interactions:1 interactions with chain D, 5 interactions with chain C- Hydrogen bonds: D:Q.137, C:N.124, C:N.124
- Hydrophobic interactions: C:L.126, C:V.179, C:H.180
DBB.16: 9 residues within 4Å:- Chain C: M.129, F.130, D.139
- Chain D: S.113, K.114, A.125, L.126, V.179, H.180
4 PLIP interactions:2 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:D.139, D:H.180
- Water bridges: C:Q.137, D:N.124
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Delatorre, P. et al., Structure of a lectin from Canavalia gladiata seeds: new structural insights for old molecules. Bmc Struct.Biol. (2007)
- Release Date
- 2006-12-19
- Peptides
- Concanavalin A: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
LC
FD
L
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.31 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MMA: methyl alpha-D-mannopyranoside(Non-covalent)
- 4 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x CA: CALCIUM ION(Non-covalent)
- 4 x DBB: D-ALPHA-AMINOBUTYRIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Delatorre, P. et al., Structure of a lectin from Canavalia gladiata seeds: new structural insights for old molecules. Bmc Struct.Biol. (2007)
- Release Date
- 2006-12-19
- Peptides
- Concanavalin A: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
FB
LC
FD
L