SMTL ID : 2d8l.1

Crystal Structure of Unsaturated Rhamnogalacturonyl Hydrolase in complex with dGlcA-GalNAc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x NGA- GCD: 4-deoxy-alpha-L-threo-hex-4-enopyranuronic acid-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose(Non-covalent)

NGA-GCD.1: 8 residues within 4Å: Chain A: H.40, Y.41, H.42, K.133, Y.136, G.332, T.333, S.334 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.41, A:K.133, A:S.334 Water bridges: A:H.40, A:D.88, A:K.133, A:K.133, A:T.333, A:Y.136, A:G.332 Salt bridges: A:H.40, A:H.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Itoh, T. et al., A novel glycoside hydrolase family 105: the structure of family 105 unsaturated rhamnogalacturonyl hydrolase complexed with a disaccharide in comparison with family 88 enzyme complexed with the disaccharide. J.Mol.Biol. (2006)

Release Date

2006-11-14

Peptides

Putative glycosyl hydrolase yteR: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative glycosyl hydrolase yteR

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