SMTL ID : 2dcl.1

Structure of PH1503 protein from Pyrococcus Horikoshii OT3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.28 Å

Oligo State

homo-hexamer

Ligands

6 x AMP: ADENOSINE MONOPHOSPHATE(Non-covalent)

AMP.1: 15 residues within 4Å: Chain A: A.41, G.42, A.43, T.44, E.75, V.77 Chain C: Y.15, G.51, F.52, G.53, K.54, R.65, P.71, D.96, M.98 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:G.53, C:K.54, A:T.44, A:V.77, A:V.77 Salt bridges: C:R.65 AMP.2: 15 residues within 4Å: Chain A: Y.15, I.16, G.51, F.52, G.53, P.71, D.96, G.97, M.98 Chain B: G.42, A.43, T.44, E.75, V.76, V.77 7 PLIP interactions: 4 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:F.52, A:G.53, A:D.96, B:T.44, B:V.77, B:V.77 Water bridges: A:G.53 AMP.3: 16 residues within 4Å: Chain B: Y.15, G.51, F.52, G.53, K.55, P.71, D.96, G.97, M.98 Chain C: A.41, G.42, A.43, T.44, E.75, V.76, V.77 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain C Hydrogen bonds: B:F.52, B:D.96, B:D.96, B:D.96, C:T.44, C:V.77, C:V.77 Water bridges: B:G.51, B:S.67 AMP.4: 15 residues within 4Å: Chain D: A.41, G.42, A.43, T.44, E.75, V.77 Chain F: Y.15, G.51, F.52, G.53, K.54, R.65, P.71, D.96, M.98 6 PLIP interactions: 4 interactions with chain F, 2 interactions with chain D Hydrogen bonds: F:G.53, F:K.54, F:D.96, D:V.77, D:V.77 Salt bridges: F:R.65 AMP.5: 15 residues within 4Å: Chain D: Y.15, I.16, G.51, F.52, G.53, P.71, D.96, G.97, M.98 Chain E: G.42, A.43, T.44, E.75, V.76, V.77 5 PLIP interactions: 2 interactions with chain E, 3 interactions with chain D Hydrogen bonds: E:V.77, E:V.77, D:F.52, D:G.53 Water bridges: D:G.53 AMP.6: 16 residues within 4Å: Chain E: Y.15, G.51, F.52, G.53, K.55, P.71, D.96, G.97, M.98 Chain F: A.41, G.42, A.43, T.44, E.75, V.76, V.77 7 PLIP interactions: 5 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:F.52, E:D.96, E:D.96, F:V.77, F:V.77 Water bridges: E:G.51, E:S.67

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagautdinov, B. et al., Crystal structure of PH1503 protein from Pyrococcus Horikoshii OT3. To be Published

Release Date

2006-07-08

Peptides

Hypothetical UPF0166 protein PH1503: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Hypothetical UPF0166 protein PH1503