SMTL ID : 2dcz.3 (2 other biounits)

Thermal Stabilization of Bacillus subtilis Family-11 Xylanase By Directed Evolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-trimer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 9 residues within 4Å: Chain A: T.93, T.109, T.110, T.111, T.126 Chain C: R.73, S.74, P.75, L.76 8 PLIP interactions: 2 interactions with chain C, 6 interactions with chain A Hydrogen bonds: C:S.74, C:L.76, A:T.93, A:T.111 Water bridges: A:T.111, A:T.111, A:T.111, A:T.111 SO4.3: 9 residues within 4Å: Chain A: R.73, S.74, P.75, L.76 Chain B: T.93, T.109, T.110, T.111, T.126 8 PLIP interactions: 2 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:S.74, A:L.76, B:T.93, B:T.111 Water bridges: B:T.111, B:T.111, B:T.111, B:T.111 SO4.5: 9 residues within 4Å: Chain B: R.73, S.74, P.75, L.76 Chain C: T.93, T.109, T.110, T.111, T.126 8 PLIP interactions: 6 interactions with chain C, 2 interactions with chain B Hydrogen bonds: C:T.93, C:T.111, B:S.74, B:L.76 Water bridges: C:T.111, C:T.111, C:T.111, C:T.111

3 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.2: 3 residues within 4Å: Chain A: V.16, N.17, A.18 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.18 DIO.4: 3 residues within 4Å: Chain B: V.16, N.17, A.18 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:A.18 DIO.6: 3 residues within 4Å: Chain C: V.16, N.17, A.18 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:A.18

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Miyazaki, K. et al., Thermal Stabilization of Bacillus subtilis Family-11 Xylanase by Directed Evolution. J.Biol.Chem. (2006)

Release Date

2006-02-07

Peptides

Endo-1,4-beta-xylanase A: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Endo-1,4-beta-xylanase A

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