SMTL ID : 2dds.4 (3 other biounits)

Crystal structure of sphingomyelinase from Bacillus cereus with cobalt ion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

3 x CO: COBALT (II) ION(Non-covalent)

CO.1: 2 residues within 4Å: Chain A: E.53 Ligands: CO.3 6 PLIP interactions: 1 interactions with chain A, 5 Ligand-Water interactions Metal complexes: A:E.53, H2O.1, H2O.1, H2O.1, H2O.1, H2O.3 CO.2: 5 residues within 4Å: Chain A: F.55, N.57, R.80, E.99, D.100 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:F.55, A:E.99, A:D.100, H2O.1, H2O.3 CO.3: 3 residues within 4Å: Chain A: W.232, H.296 Ligands: CO.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:H.296, H2O.1, H2O.1, H2O.1, H2O.9

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ago, H. et al., Structural Basis of the Sphingomyelin Phosphodiesterase Activity in Neutral Sphingomyelinase from Bacillus cereus. J.Biol.Chem. (2006)

Release Date

2006-05-02

Peptides

Sphingomyelin phosphodiesterase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Sphingomyelin phosphodiesterase

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