SMTL ID : 2de2.1

Crystal structure of desulfurization enzyme DSZB

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.1: 6 residues within 4Å: Chain A: H.162, H.166, L.243, D.246, R.248, N.249 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.243, A:D.246 Hydrogen bonds: A:N.249 Salt bridges: A:H.162, A:H.166, A:R.248

7 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 8 residues within 4Å: Chain A: P.28, V.29, G.73, W.155, P.182, G.183, E.192, W.228 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.73, A:E.192 Water bridges: A:R.70, A:R.70, A:R.70 GOL.3: 4 residues within 4Å: Chain A: F.61, D.143, P.144, W.145 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.143, A:W.145 Water bridges: A:H.60 GOL.4: 6 residues within 4Å: Chain A: P.30, P.96, L.97, L.98, F.309, R.316 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:L.98, A:R.316, A:R.316 Water bridges: A:R.316 GOL.5: 7 residues within 4Å: Chain A: E.81, G.82, P.86, E.344, P.345, V.346, A.347 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.81, A:A.347 Water bridges: A:E.344 GOL.6: 2 residues within 4Å: Chain A: A.215, S.216 1 PLIP interactions: 1 interactions with chain A Water bridges: A:R.106 GOL.7: 4 residues within 4Å: Chain A: A.115, D.116, A.118, R.120 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.116, A:R.120 GOL.8: 8 residues within 4Å: Chain A: Y.24, N.26, L.34, S.37, E.38, L.49, V.51, E.193 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.26, A:S.37, A:L.49 Water bridges: A:L.49, A:L.49

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, W.C. et al., Crystal structure and desulfurization mechanism of 2'-hydroxybiphenyl-2-sulfinic acid desulfinase. J.Biol.Chem. (2006)

Release Date

2006-08-01

Peptides

DIBENZOTHIOPHENE DESULFURIZATION ENZYME B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DIBENZOTHIOPHENE DESULFURIZATION ENZYME B