SMTL ID : 2dfk.3 (2 other biounits)

Crystal structure of the CDC42-Collybistin II complex

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

hetero-2-2-mer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: E.91, Y.94, R.95, M.98 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.91, A:E.91, A:R.95 GOL.2: 2 residues within 4Å: Chain A: R.206, Y.207 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.206, A:Y.207 GOL.3: 4 residues within 4Å: Chain A: K.106, Q.107, Y.108, N.109 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.106, A:N.109 Water bridges: A:Q.107 GOL.5: 7 residues within 4Å: Chain B: S.25, Y.26, T.28, N.29, Q.165, L.168, K.169 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.29, B:Q.165, B:K.169 GOL.7: 2 residues within 4Å: Chain D: T.27, T.28 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:T.27 GOL.8: 5 residues within 4Å: Chain D: T.27, V.39, F.40, D.41, Y.43 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:T.27, D:T.27, D:V.39, D:D.41, D:D.41

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.4: 8 residues within 4Å: Chain B: D.14, G.15, A.16, V.17, G.18, K.19, T.20, E.65 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:A.16, B:V.17, B:G.18, B:K.19, B:T.20 Water bridges: B:A.16, B:C.21 Salt bridges: B:K.19 SO4.6: 8 residues within 4Å: Chain D: D.14, G.15, A.16, V.17, G.18, K.19, T.20, A.62 10 PLIP interactions: 10 interactions with chain D Hydrogen bonds: D:A.16, D:V.17, D:G.18, D:K.19, D:T.20, D:T.20 Water bridges: D:A.16, D:C.21, D:E.65 Salt bridges: D:K.19

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Xiang, S. et al., The Crystal Structure of Cdc42 in Complex with Collybistin II, a Gephyrin-interacting Guanine Nucleotide Exchange Factor. J.Mol.Biol. (2006)

Release Date

2006-05-02

Peptides

collybistin II: AC
cell division cycle 42 isoform 1: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

B
B

D
D

collybistin II

cell division cycle 42 isoform 1

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