SMTL ID : 2dfn.1

Structure of shikimate kinase from Mycobacterium tuberculosis complexed with ADP and shikimate at 1.9 angstrons of resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.93 Å

Oligo State

monomer

Ligands

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 6 residues within 4Å: Chain A: P.11, K.15, G.80, R.117 Ligands: ADP.2, SKM.3 Ligand excluded by PLIP

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 16 residues within 4Å: Chain A: L.10, P.11, G.12, S.13, G.14, K.15, S.16, T.17, R.110, R.117, T.150, R.153, N.154, P.155, V.158 Ligands: CL.1 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:G.12, A:S.13, A:G.14, A:K.15, A:S.16, A:T.17, A:T.17, A:T.17, A:R.110, A:R.117, A:R.153 Water bridges: A:S.16, A:S.16, A:S.16, A:D.32, A:R.110, A:R.110, A:R.117 Salt bridges: A:K.15, A:R.117 pi-Cation interactions: A:R.110, A:R.110

1 x SKM: (3R,4S,5R)-3,4,5-TRIHYDROXYCYCLOHEX-1-ENE-1-CARBOXYLIC ACID(Non-covalent)

SKM.3: 12 residues within 4Å: Chain A: P.11, D.34, I.45, F.57, R.58, G.79, G.80, G.81, P.118, L.119, R.136 Ligands: CL.1 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.34, A:D.34, A:G.80 Water bridges: A:A.82, A:R.117 Salt bridges: A:R.58, A:R.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dias, M.V. et al., Effects of the magnesium and chloride ions and shikimate on the structure of shikimate kinase from Mycobacterium tuberculosis. ACTA CRYSTALLOGR.,SECT.F (2007)

Release Date

2006-09-03

Peptides

Shikimate kinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Shikimate kinase

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