SMTL ID : 2dfy.2 (1 other biounit)

Crystal structure of a cyclized protein fusion of LMO4 LIM domains 1 and 2 with the LIM interacting domain of LDB1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.6, C.9, H.27, C.30 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.6, A:C.9, A:H.27, A:C.30 ZN.2: 4 residues within 4Å: Chain A: C.33, C.36, C.56, D.59 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.33, A:C.36, A:C.56, A:D.59 ZN.3: 4 residues within 4Å: Chain A: C.98, C.101, C.120, D.123 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.98, A:C.101, A:C.120, A:D.123 ZN.4: 4 residues within 4Å: Chain A: C.70, C.73, H.92, C.95 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.70, A:C.73, A:H.92, A:C.95

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: R.5, G.10, G.11, K.12 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.5, A:R.5, A:K.12 Water bridges: A:K.12

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jeffries, C.M.J. et al., Stabilization of a binary protein complex by intein-mediated cyclization. Protein Sci. (2006)

Release Date

2006-10-31

Peptides

fusion protein of LIM domain transcription factor LMO4 and LIM domain-binding protein 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

fusion protein of LIM domain transcription factor LMO4 and LIM domain-binding protein 1

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