SMTL ID : 2dg1.2 (6 other biounits)

Crystal structure of Drp35, a 35kDa drug responsive protein from Staphylococcus aureus, complexed with Ca2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.72 Å

Oligo State

monomer

Ligands

2 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.48, D.138, N.185, D.236, S.237 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:E.48, A:D.236, H2O.1, H2O.9, H2O.9 CA.2: 7 residues within 4Å: Chain A: S.110, T.111, G.112, D.130, T.133, A.134, Y.135 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:S.110, A:G.112, A:D.130, A:T.133, A:Y.135

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: C.239, I.240, Q.286, F.287, G.318, H.319 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:I.240, A:Q.286, A:F.287, A:H.319 GOL.4: 2 residues within 4Å: Chain A: K.16, I.23 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.16 Water bridges: A:I.23

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, Y. et al., Structural and Mutational Analyses of Drp35 from Staphylococcus aureus: A POSSIBLE MECHANISM FOR ITS LACTONASE ACTIVITY. J.Biol.Chem. (2007)

Release Date

2006-12-12

Peptides

DrP35: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

DrP35

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