SMTL ID : 2dgj.3 (2 other biounits)

Crystal structure of EbhA (756-1003 domain) from Staphylococcus aureus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: A.109, T.110, T.111, G.114 Chain D: N.219, H.252 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain D Hydrogen bonds: A:T.110, A:T.110, A:T.111 Water bridges: A:T.110, A:T.110 Salt bridges: D:H.252 SO4.3: 6 residues within 4Å: Chain B: A.109, T.110, T.111, G.114 Chain C: N.219, H.252 6 PLIP interactions: 1 interactions with chain C, 5 interactions with chain B Salt bridges: C:H.252 Hydrogen bonds: B:T.110, B:T.110, B:T.111 Water bridges: B:T.110, B:T.110 SO4.5: 4 residues within 4Å: Chain C: A.109, T.110, T.111, G.114 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:T.110, C:T.111 SO4.7: 4 residues within 4Å: Chain D: A.109, T.110, T.111, G.114 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:T.110, D:T.110, D:T.111

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 3 residues within 4Å: Chain A: A.78, K.81, R.85 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.85, A:R.85 GOL.4: 3 residues within 4Å: Chain B: A.78, K.81, R.85 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.85, B:R.85

2 x ACY: ACETIC ACID(Non-functional Binders)

ACY.6: 3 residues within 4Å: Chain C: K.81, R.85, N.107 5 PLIP interactions: 5 interactions with chain C Hydrophobic interactions: C:N.107 Water bridges: C:K.81, C:R.85 Salt bridges: C:K.81, C:R.85 ACY.8: 3 residues within 4Å: Chain D: K.81, R.85, N.107 5 PLIP interactions: 5 interactions with chain D Hydrophobic interactions: D:N.107 Water bridges: D:K.81, D:R.85 Salt bridges: D:K.81, D:R.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tanaka, Y. et al., A helical string of alternately connected three-helix bundles for the cell wall-associated adhesion protein Ebh from Staphylococcus aureus. Structure (2008)

Release Date

2007-03-20

Peptides

hypothetical protein ebhA: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

C
A

D
A

hypothetical protein ebhA

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