SMTL ID : 2dio.1

Crystal Structure of the Allene Oxide Cyclase 2 with bound inhibitor vernolic acid

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-trimer

Ligands

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: D.28, R.29, K.54, N.188 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.28, A:R.29, A:N.188 Water bridges: A:K.54, A:R.63, B:E.75 GOL.2: 8 residues within 4Å: Chain A: E.75, H.76, V.77, P.78, E.79 Chain C: R.29, N.188 Ligands: GOL.6 5 PLIP interactions: 2 interactions with chain C, 3 interactions with chain A Hydrogen bonds: C:R.29, C:N.188, A:E.79 Water bridges: A:E.75, A:E.75 GOL.4: 4 residues within 4Å: Chain B: D.28, R.29, K.54, N.188 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.29, B:N.188, B:N.188 Water bridges: B:R.63 GOL.5: 6 residues within 4Å: Chain A: L.35, N.37 Chain B: L.35, N.37 Chain C: L.35, N.37 5 PLIP interactions: 1 interactions with chain B, 3 interactions with chain C, 1 interactions with chain A Hydrogen bonds: B:N.37, C:N.37, A:N.37 Water bridges: C:K.36, C:N.37 GOL.6: 5 residues within 4Å: Chain C: D.28, R.29, K.54, N.188 Ligands: GOL.2 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:R.29, C:N.188 Water bridges: C:D.28, C:R.63, C:R.63, C:N.188

1 x EOD: 11-[(2R,3S)-3-PENTYLOXIRAN-2-YL]UNDECANOIC ACID(Non-covalent)

EOD.3: 16 residues within 4Å: Chain B: E.23, P.32, I.34, L.41, F.43, V.49, F.51, N.53, C.71, F.85, A.87, Y.89, Y.105, Y.136, L.140, Y.142 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:P.32, B:I.34, B:F.43, B:V.49, B:F.51, B:F.85, B:A.87, B:Y.89, B:Y.105, B:Y.105, B:Y.105, B:L.140 Hydrogen bonds: B:N.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hofmann, E. et al., The Crystal Structure of Arabidopsis thaliana Allene Oxide Cyclase: Insights into the Oxylipin Cyclization Reaction. Plant Cell (2006)

Release Date

2006-11-21

Peptides

Allene oxide cyclase 2: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Allene oxide cyclase 2

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