SMTL ID : 2dj5.1 (1 other biounit)

Crystal Structure of the vitamin B12 biosynthetic cobaltochelatase, CbiXS, from Archaeoglobus fulgidus

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.55 Å

Oligo State

homo-dimer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 2 residues within 4Å: Chain A: G.1, M.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.1, A:M.2 PO4.5: 3 residues within 4Å: Chain A: Y.112 Chain B: L.24, R.28 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.28 PO4.6: 3 residues within 4Å: Chain A: L.24, R.28 Chain B: Y.112 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Y.112, B:Y.112 Salt bridges: A:R.28 PO4.7: 5 residues within 4Å: Chain A: Y.18 Chain B: F.69, I.70, S.71 Ligands: GOL.3 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:I.70, B:S.71 Water bridges: B:S.71, B:G.73

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 1 residues within 4Å: Chain A: R.3 No protein-ligand interaction detected (PLIP) GOL.3: 4 residues within 4Å: Chain A: F.69, I.70, S.71 Ligands: PO4.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:I.70, A:S.71 Water bridges: A:L.68 GOL.4: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yin, J. et al., Crystal Structure of the Vitamin B(12) Biosynthetic Cobaltochelatase, CbiX (S), from Archaeoglobus Fulgidus. J.STRUCT.FUNCT.GENOM. (2006)

Release Date

2006-09-12

Peptides

Sirohydrochlorin cobaltochelatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Sirohydrochlorin cobaltochelatase

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