SMTL ID : 2dkv.1

Crystal structure of class I chitinase from Oryza sativa L. japonica

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 9 residues within 4Å: Chain A: E.123, I.173, Q.174, L.175, S.176, N.180, F.213, V.254, N.255 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.176, A:S.176, A:N.180 Salt bridges: A:E.123 MES.2: 2 residues within 4Å: Chain A: P.14, N.15 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.15

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.3: 5 residues within 4Å: Chain A: T.108, R.111, I.228, T.229, G.230 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.111 MPD.4: 6 residues within 4Å: Chain A: A.78, G.126, W.128, W.138, C.141, F.142 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.128, A:W.138, A:F.142 Hydrogen bonds: A:G.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kezuka, Y. et al., Structure of full-length class I chitinase from rice revealed by X-ray crystallography and small-angle X-ray scattering. Proteins (2010)

Release Date

2007-05-01

Peptides

chitinase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

chitinase

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