SMTL ID : 2dld.1

D-LACTATE DEHYDROGENASE COMPLEXED WITH NADH AND OXAMATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-dimer

Ligands

2 x NAI: 1,4-DIHYDRONICOTINAMIDE ADENINE DINUCLEOTIDE(Non-covalent)

NAI.1: 20 residues within 4Å: Chain A: G.153, T.154, G.155, H.156, I.157, D.176, I.177, H.206, V.207, P.208, N.213, C.234, S.235, R.236, D.260, T.261, H.297, A.299, F.337 Ligands: OXM.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:G.155, A:I.157, A:I.177, A:N.213, A:N.213, A:S.235, A:D.260 Salt bridges: A:H.156 NAI.3: 20 residues within 4Å: Chain B: G.153, T.154, G.155, H.156, I.157, G.158, D.176, I.177, H.206, V.207, P.208, N.213, C.234, S.235, R.236, D.260, T.261, H.297, A.299 Ligands: OXM.4 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:T.154, B:G.155, B:I.157, B:G.158, B:D.176, B:I.177, B:N.213, B:N.213, B:S.235, B:S.235, B:D.260, B:A.299 Salt bridges: B:H.156

2 x OXM: OXAMIC ACID(Non-covalent)

OXM.2: 4 residues within 4Å: Chain A: S.235, R.236, H.297 Ligands: NAI.1 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.236, A:H.297 OXM.4: 3 residues within 4Å: Chain B: R.236, H.297 Ligands: NAI.3 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.236, B:H.297

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bernard, N. et al., Dehydrogenases Engineering to Correct Substrate Inhibition in a Commercial Dehydrogenase. To be Published

Release Date

1996-03-14

Peptides

D-LACTATE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D-LACTATE DEHYDROGENASE