SMTL ID : 2dln.1

VANCOMYCIN RESISTANCE: STRUCTURE OF D-ALANINE:D-ALANINE LIGASE AT 2.3 ANGSTROMS RESOLUTION

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: K.215, D.257, E.270 Ligands: ADP.3, PHY.4 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.257, A:E.270 MG.2: 4 residues within 4Å: Chain A: E.270, N.272 Ligands: ADP.3, PHY.4 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.270, A:E.270, H2O.1

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 23 residues within 4Å: Chain A: K.97, I.142, K.144, E.148, G.149, S.150, S.151, M.154, E.180, K.181, W.182, L.183, E.187, F.209, Y.210, K.215, D.257, M.259, L.269, E.270 Ligands: MG.1, MG.2, PHY.4 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:K.144, A:S.150, A:S.151, A:E.180, A:K.181, A:L.183, A:E.187, A:Y.210 Water bridges: A:E.148, A:V.152, A:N.272 Salt bridges: A:K.97, A:K.97, A:K.144, A:K.215, A:K.215

1 x PHY: 1(S)-AMINOETHYL-(2-CARBOXYPROPYL)PHOSPHORYL-PHOSPHINIC ACID(Non-covalent)

PHY.4: 18 residues within 4Å: Chain A: E.15, H.63, G.149, S.150, Y.210, K.215, Y.216, R.255, D.257, E.270, N.272, P.275, G.276, S.281, L.282 Ligands: MG.1, MG.2, ADP.3 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:K.215 Hydrogen bonds: A:E.15, A:S.150, A:R.255, A:R.255, A:N.272, A:G.276, A:L.282 Water bridges: A:E.15, A:E.68 Salt bridges: A:K.215, A:R.255, A:R.255

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fan, C. et al., Vancomycin resistance: structure of D-alanine:D-alanine ligase at 2.3 A resolution. Science (1994)

Release Date

1995-11-01

Peptides

D-ALANINE--D-ALANINE LIGASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D-ALANINE--D-ALANINE LIGASE

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