SMTL ID : 2dr3.1

Crystal Structure of RecA superfamily ATPase PH0284 from Pyrococcus horikoshii OT3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-hexamer

Ligands

6 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 17 residues within 4Å: Chain A: G.31, P.32, G.33, T.34, G.35, K.36, T.37, I.38, R.205, I.226, T.227, D.228 Chain B: K.211, M.212, T.215, S.216, H.217 23 PLIP interactions: 17 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:G.33, A:T.34, A:G.35, A:K.36, A:T.37, A:T.37, A:I.38, A:R.205, A:D.228, B:M.212, B:T.215, B:H.217 Water bridges: A:K.36, A:K.36, A:K.36, A:T.37, A:R.205, A:D.228, A:D.228, B:G.214, B:S.216 Salt bridges: A:K.36, B:K.211 ADP.2: 16 residues within 4Å: Chain B: G.31, P.32, G.33, T.34, G.35, K.36, T.37, I.38, R.205, I.226 Chain C: H.186, K.211, M.212, T.215, S.216, H.217 20 PLIP interactions: 13 interactions with chain B, 7 interactions with chain C Hydrogen bonds: B:G.31, B:G.33, B:T.34, B:G.35, B:K.36, B:T.37, B:I.38, B:R.205, C:M.212, C:H.217 Water bridges: B:T.37, B:R.205, B:D.228, B:D.228, C:R.213, C:R.213, C:R.213, C:G.214 Salt bridges: B:K.36, C:H.186 ADP.3: 19 residues within 4Å: Chain C: G.31, P.32, G.33, T.34, G.35, K.36, T.37, I.38, F.73, R.205, I.226, T.227, D.228 Chain D: K.211, M.212, R.213, T.215, S.216, H.217 20 PLIP interactions: 14 interactions with chain C, 6 interactions with chain D Hydrogen bonds: C:G.33, C:T.34, C:T.34, C:G.35, C:K.36, C:T.37, C:I.38, C:D.228, D:M.212, D:R.213, D:H.217 Water bridges: C:K.36, C:K.36, C:R.205, C:R.205, C:R.205, D:G.214, D:G.214, D:S.216 Salt bridges: C:K.36 ADP.4: 18 residues within 4Å: Chain D: G.31, P.32, G.33, T.34, G.35, K.36, T.37, I.38, R.205, I.226, T.227, D.228 Chain E: K.211, M.212, R.213, T.215, S.216, H.217 22 PLIP interactions: 15 interactions with chain D, 7 interactions with chain E Hydrogen bonds: D:G.33, D:T.34, D:T.34, D:G.35, D:K.36, D:T.37, D:I.38, D:R.205, E:M.212, E:H.217 Water bridges: D:K.36, D:K.36, D:K.36, D:R.205, D:D.228, D:D.228, E:R.213, E:R.213, E:G.214, E:S.216, E:S.216 Salt bridges: D:K.36 ADP.5: 18 residues within 4Å: Chain E: G.31, P.32, G.33, T.34, G.35, K.36, T.37, I.38, F.73, R.205, I.226, T.227, D.228 Chain F: K.211, M.212, T.215, S.216, H.217 22 PLIP interactions: 17 interactions with chain E, 5 interactions with chain F Hydrogen bonds: E:G.31, E:G.33, E:T.34, E:T.34, E:G.35, E:K.36, E:T.37, E:I.38, E:R.205, E:D.228, F:M.212, F:H.217 Water bridges: E:K.36, E:T.37, E:T.37, E:Q.171, E:R.205, E:D.228, F:R.213, F:R.213, F:G.214 Salt bridges: E:K.36 ADP.6: 19 residues within 4Å: Chain A: K.211, M.212, R.213, T.215, S.216, H.217 Chain F: G.31, P.32, G.33, T.34, G.35, K.36, T.37, I.38, F.73, R.205, I.226, T.227, D.228 21 PLIP interactions: 7 interactions with chain A, 14 interactions with chain F Hydrogen bonds: A:M.212, A:T.215, A:H.217, F:G.31, F:G.33, F:T.34, F:T.34, F:G.35, F:K.36, F:T.37, F:I.38, F:R.205, F:D.228 Water bridges: A:S.216, F:K.36, F:K.36, F:R.205 Salt bridges: A:K.211, A:R.213, A:R.213, F:K.36

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagautdinov, B. et al., Crystal Structure of RecA superfamily ATPase PH0284 from Pyrococcus horikoshii OT3. To be Published

Release Date

2006-12-06

Peptides

UPF0273 protein PH0284: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

UPF0273 protein PH0284