SMTL ID : 2dru.1

Crystal structure and binding properties of the CD2 and CD244 (2B4) binding protein, CD48

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: E.114, N.117, T.119, Q.152 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.119 NAG.2: 1 residues within 4Å: Chain A: N.75 No protein-ligand interaction detected (PLIP) NAG.3: 4 residues within 4Å: Chain A: G.14, S.15, N.16, Y.74 No protein-ligand interaction detected (PLIP)

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: D.129, R.145, R.167 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.129, A:R.145, A:R.145, A:R.167 GOL.5: 4 residues within 4Å: Chain A: R.142, Q.146, T.148, S.150 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.142, A:R.142, A:Q.146, A:S.150 Water bridges: A:S.150 GOL.6: 4 residues within 4Å: Chain A: K.78, G.127, T.128, D.129 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.78, A:K.78, A:D.129 Water bridges: A:G.127 GOL.7: 4 residues within 4Å: Chain A: N.8, T.99, E.101, R.167 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.99, A:T.99, A:R.167, A:R.167 GOL.8: 7 residues within 4Å: Chain A: Q.2, D.3, Q.4, S.5, P.7, W.96, K.97 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.4, A:K.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Evans, E.J. et al., Crystal Structure and Binding Properties of the CD2 and CD244 (2B4)-binding Protein, CD48. J.Biol.Chem. (2006)

Release Date

2006-07-04

Peptides

chimera of CD48 antigen and T-cell surface antigen CD2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

chimera of CD48 antigen and T-cell surface antigen CD2