SMTL ID : 2dts.1

Crystal Structure of the Defucosylated Fc Fragment from Human Immunoglobulin G1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

1 x NAG- NAG- BMA- MAN- NAG- MAN: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN.1: 11 residues within 4Å: Chain A: F.17, F.19, K.22, T.36, V.40, D.41, Q.71, N.73, T.75, R.77 Ligands: NAG-NAG-BMA-MAN-NAG-MAN-NAG.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.22, A:K.22 Water bridges: A:T.36

1 x NAG- NAG- BMA- MAN- NAG- MAN- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-NAG-MAN-NAG.2: 11 residues within 4Å: Chain B: F.17, F.19, K.22, V.40, D.41, Q.71, N.73, T.75, R.77 Ligands: NAG-NAG-BMA-MAN-NAG-MAN.1, NAG-NAG-BMA-MAN-NAG-MAN.1 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.77, B:K.22, B:K.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matsumiya, S. et al., Structural comparison of fucosylated and nonfucosylated fc fragments of human immunoglobulin g1. J.Mol.Biol. (2007)

Release Date

2007-03-13

Peptides

Ig gamma-1 chain C region: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ig gamma-1 chain C region

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