SMTL ID : 2du2.1

Crystal Structure Analysis of the L-Lactate Oxidase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-tetramer

Ligands

4 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 22 residues within 4Å: Chain A: Y.40, I.41, A.92, P.93, I.94, A.95, S.122, Q.144, Y.146, T.172, K.241, S.263, H.265, G.266, R.268, D.296, S.297, G.298, V.299, R.300, G.319, R.320 24 PLIP interactions: 24 interactions with chain A Hydrophobic interactions: A:Y.40, A:I.94, A:I.94, A:R.320 Hydrogen bonds: A:P.93, A:A.95, A:S.122, A:Q.144, A:Y.146, A:T.172, A:K.241, A:K.241, A:K.241, A:S.263, A:S.297, A:G.298, A:V.299, A:R.320 Water bridges: A:N.54, A:G.319, A:G.319, A:R.320 Salt bridges: A:R.300, A:R.320 FMN.2: 21 residues within 4Å: Chain B: I.41, A.92, P.93, I.94, A.95, S.122, Q.144, Y.146, T.172, K.241, S.263, H.265, G.266, R.268, D.296, S.297, G.298, V.299, R.300, G.319, R.320 24 PLIP interactions: 24 interactions with chain B Hydrophobic interactions: B:I.94, B:I.94, B:R.320 Hydrogen bonds: B:P.93, B:A.95, B:S.122, B:Q.144, B:Y.146, B:T.172, B:K.241, B:K.241, B:K.241, B:S.263, B:H.265, B:S.297, B:G.298, B:V.299, B:R.320 Water bridges: B:N.54, B:R.268, B:G.319, B:R.320 Salt bridges: B:R.300, B:R.320 FMN.3: 23 residues within 4Å: Chain C: I.41, A.92, P.93, I.94, A.95, A.96, S.122, Q.144, Y.146, T.172, K.241, S.263, H.265, G.266, R.268, D.296, S.297, G.298, V.299, R.300, G.319, R.320, L.323 30 PLIP interactions: 30 interactions with chain C Hydrophobic interactions: C:I.94, C:I.94, C:I.94, C:A.96, C:R.320, C:L.323 Hydrogen bonds: C:P.93, C:A.95, C:S.122, C:Q.144, C:Y.146, C:T.172, C:K.241, C:K.241, C:K.241, C:S.263, C:H.265, C:G.266, C:G.298, C:V.299, C:R.320 Water bridges: C:R.268, C:S.297, C:S.297, C:G.319, C:G.319, C:R.320, C:R.320 Salt bridges: C:R.300, C:R.320 FMN.4: 22 residues within 4Å: Chain D: I.41, A.92, P.93, I.94, A.95, A.96, S.122, Q.144, Y.146, T.172, K.241, S.263, H.265, G.266, R.268, D.296, S.297, G.298, V.299, R.300, G.319, R.320 28 PLIP interactions: 28 interactions with chain D Hydrophobic interactions: D:I.41, D:I.94, D:I.94, D:A.96, D:R.320 Hydrogen bonds: D:P.93, D:A.95, D:S.122, D:Q.144, D:Y.146, D:T.172, D:K.241, D:K.241, D:K.241, D:S.263, D:H.265, D:G.266, D:S.297, D:G.298, D:V.299, D:R.320 Water bridges: D:R.268, D:G.319, D:G.319, D:R.320, D:R.320 Salt bridges: D:R.300, D:R.320

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Umena, Y. et al., The crystal structure of L-lactate oxidase from Aerococcus viridans at 2.1A resolution reveals the mechanism of strict substrate recognition. Biochem.Biophys.Res.Commun. (2006)

Release Date

2006-12-05

Peptides

Lactate oxidase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Lactate oxidase

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