SMTL ID : 2dve.1

Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii OT3 in Complex with Biotinyl-5'-AMP, Mutation Arg51Ala

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x BT5: BIOTINYL-5-AMP(Non-covalent)

BT5.1: 25 residues within 4Å: Chain A: S.21, T.22, N.23, Q.42, G.45, H.46, G.47, R.48, A.51, K.52, W.53, E.54, L.62, S.63, N.103, D.104, K.111, G.114, V.115, L.116, I.128, G.129, N.131, P.137, A.140 20 PLIP interactions: 20 interactions with chain A Hydrophobic interactions: A:W.53, A:W.53, A:L.116 Hydrogen bonds: A:T.22, A:N.23, A:Q.42, A:Q.42, A:H.46, A:H.46, A:R.48, A:E.54, A:N.103, A:K.111, A:N.131, A:N.131 Water bridges: A:K.52 Salt bridges: A:K.111, A:K.111 pi-Stacking: A:W.53, A:W.53 BT5.2: 26 residues within 4Å: Chain B: S.21, T.22, N.23, Q.42, G.45, H.46, G.47, R.48, A.51, K.52, W.53, E.54, W.61, L.62, S.63, N.103, D.104, K.111, G.114, V.115, L.116, I.128, G.129, N.131, P.137, A.140 21 PLIP interactions: 21 interactions with chain B Hydrophobic interactions: B:W.53, B:W.53, B:L.116 Hydrogen bonds: B:T.22, B:N.23, B:Q.42, B:Q.42, B:H.46, B:H.46, B:R.48, B:E.54, B:N.103, B:K.111, B:N.131, B:N.131 Water bridges: B:K.52 Salt bridges: B:R.48, B:K.111, B:K.111 pi-Stacking: B:W.53, B:W.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagautdinov, B. et al., Ligand Structures of Biotin Protein Ligase From Pyrococcus Horikoshii OT3. To be Published

Release Date

2007-01-31

Peptides

Biotin Protein Ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Biotin Protein Ligase

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