SMTL ID : 2dvm.2 (1 other biounit)

NAD complex structure of PH1275 protein from Pyrococcus horikoshii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)

NAD.1: 20 residues within 4Å: Chain A: R.74, S.139, T.165, G.193, G.195, A.196, A.197, G.198, V.218, E.219, L.220, P.225, F.270, T.271, L.295, A.296, N.297, G.318, I.326, N.328 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:T.165, A:A.197 Hydrogen bonds: A:A.196, A:A.197, A:G.198, A:T.271, A:N.297, A:N.297, A:I.326 Water bridges: A:R.74, A:S.139, A:S.139, A:S.139, A:D.161, A:D.161, A:G.195, A:N.297, A:N.328 pi-Stacking: A:F.270 NAD.3: 19 residues within 4Å: Chain B: R.74, S.139, T.165, G.193, G.195, A.196, A.197, V.218, E.219, L.220, P.225, F.270, T.271, L.295, A.296, N.297, G.318, I.326, N.328 16 PLIP interactions: 16 interactions with chain B Hydrophobic interactions: B:T.165, B:A.197 Hydrogen bonds: B:A.196, B:A.197, B:G.198, B:T.271, B:N.297, B:I.326 Water bridges: B:R.74, B:S.139, B:G.195, B:E.219, B:R.241, B:N.328 Salt bridges: B:R.74 pi-Stacking: B:F.270

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.2: 11 residues within 4Å: Chain A: P.53, G.54, Y.57, K.62, A.126, P.127, D.154, I.155, R.399 Chain B: L.84, K.111 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:D.154 Water bridges: A:I.155, B:K.111 Salt bridges: A:K.62, B:K.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lokanath, N.K. et al., NAD complex structure of PH1275 protein from Pyrococcus horikoshii. To be Published

Release Date

2007-10-02

Peptides

439aa long hypothetical malate oxidoreductase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

439aa long hypothetical malate oxidoreductase

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