SMTL ID : 2dw1.2 (1 other biounit)

Crystal structure of VAP2 from Crotalus atrox venom (Form 2-2 crystal)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- BMA- FUC: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-FUC.1: 5 residues within 4Å: Chain A: Y.157, S.159, G.161, N.181, C.182 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.159, A:G.161

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain A: H.143, H.147, H.153 Ligands: GM6.6 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.143, A:H.147, A:H.153

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 4 residues within 4Å: Chain A: E.11, D.95, C.198, N.201 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.11, A:D.95, A:C.198, H2O.1, H2O.2 CA.4: 6 residues within 4Å: Chain A: V.213, N.216, L.218, E.220, E.223, D.226 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:V.213, A:L.218, A:E.220, A:E.223, A:D.226 CA.5: 5 residues within 4Å: Chain A: D.277, P.278, E.280, D.292, V.293 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.277, A:P.278, A:D.292, A:V.293, H2O.3

1 x GM6: 3-(N-HYDROXYCARBOXAMIDO)-2-ISOBUTYLPROPANOYL-TRP-METHYLAMIDE(Non-covalent)

GM6.6: 15 residues within 4Å: Chain A: R.107, V.108, I.109, G.110, Y.130, I.140, H.143, E.144, H.147, H.153, R.168, P.169, E.170, I.171 Ligands: ZN.2 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:R.107, A:V.108, A:I.109, A:I.140 Hydrogen bonds: A:I.109, A:G.110, A:P.169, A:I.171

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Igarashi, T. et al., Crystal structures of catrocollastatin/VAP2B reveal a dynamic, modular architecture of ADAM/adamalysin/reprolysin family proteins. Febs Lett. (2007)

Release Date

2007-07-10

Peptides

Catrocollastatin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Catrocollastatin

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