SMTL ID : 2dwo.1

PFKFB3 in complex with ADP and PEP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-dimer

Ligands

2 x F6P: 6-O-phosphono-beta-D-fructofuranose(Non-covalent)

F6P.1: 12 residues within 4Å: Chain A: R.253, N.260, I.265, G.266, E.323, Y.334, R.348, K.352, Y.363, Q.389, R.393, T.441 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:R.253, A:N.260, A:G.266, A:Y.334, A:Y.363, A:Y.363, A:Q.389, A:Q.389 Water bridges: A:H.254, A:G.266, A:Y.334, A:R.348, A:K.352, A:Y.357, A:R.393, A:R.393 Salt bridges: A:R.348, A:K.352, A:R.393 F6P.4: 12 residues within 4Å: Chain B: R.253, N.260, I.265, G.266, E.323, Y.334, R.348, K.352, Y.363, Q.389, R.393, T.441 21 PLIP interactions: 21 interactions with chain B Hydrogen bonds: B:R.253, B:N.260, B:G.266, B:E.323, B:Y.363, B:Q.389, B:Q.389, B:T.441 Water bridges: B:H.254, B:G.266, B:Y.334, B:Y.334, B:Y.334, B:R.348, B:K.352, B:Y.357, B:R.393, B:R.393 Salt bridges: B:R.348, B:K.352, B:R.393

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.2: 18 residues within 4Å: Chain A: L.43, P.44, A.45, R.46, G.47, K.48, T.49, Y.50, S.153, V.160, N.164, E.167, V.168, K.169, V.215, V.218, V.244, Y.425 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:A.45, A:R.46, A:G.47, A:K.48, A:T.49, A:Y.50, A:S.153, A:N.164 Water bridges: A:K.48, A:K.48, A:K.48, A:T.49, A:T.49, A:D.125, A:E.167, A:K.169, A:K.169, A:V.215, A:V.218 Salt bridges: A:K.48, A:K.169, A:K.169 ADP.5: 18 residues within 4Å: Chain B: L.43, P.44, A.45, R.46, G.47, K.48, T.49, Y.50, S.153, V.160, N.164, E.167, V.168, K.169, V.215, V.218, V.244, Y.425 24 PLIP interactions: 24 interactions with chain B Hydrogen bonds: B:A.45, B:R.46, B:G.47, B:K.48, B:T.49, B:T.49, B:Y.50, B:S.153, B:N.164, B:Y.425 Water bridges: B:K.48, B:K.48, B:K.48, B:T.49, B:D.125, B:E.167, B:K.169, B:K.169, B:K.169, B:V.215, B:V.218 Salt bridges: B:K.48, B:K.169, B:K.169

2 x PEP: PHOSPHOENOLPYRUVATE(Non-functional Binders)

PEP.3: 9 residues within 4Å: Chain A: V.71, G.72, R.75, F.88, R.99, A.126, T.127, R.190, Y.194 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:V.71, A:R.99 Hydrogen bonds: A:T.127, A:T.127 Water bridges: A:G.72, A:N.128, A:R.133, A:R.133, A:R.190, A:R.190, A:Y.194 Salt bridges: A:R.75, A:R.99, A:R.190 PEP.6: 9 residues within 4Å: Chain B: V.71, G.72, R.75, F.88, R.99, A.126, T.127, R.190, Y.194 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:V.71, B:R.99 Hydrogen bonds: B:T.127, B:Y.194 Water bridges: B:G.72, B:N.128, B:N.128, B:R.133, B:R.190, B:R.190, B:R.190 Salt bridges: B:R.75, B:R.99, B:R.190

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, S.G. et al., A Direct Substrate-Substrate Interaction Found in the Kinase Domain of the Bifunctional Enzyme, 6-Phosphofructo-2-kinase/Fructose-2,6-bisphosphatase. J.Mol.Biol. (2007)

Release Date

2007-07-03

Peptides

6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3

Related Entries With Identical Sequence