SMTL ID : 2dxc.1

Recombinant thiocyanate hydrolase, fully-matured form

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-4-4-4-mer

Ligands

4 x 3CO: COBALT (III) ION(Non-covalent)

3CO.1: 5 residues within 4Å: Chain C: C.128, C.131, S.132, C.133 Ligands: TLA.2 1 PLIP interactions: 1 interactions with chain C Metal complexes: C:C.128 3CO.4: 5 residues within 4Å: Chain F: C.128, C.131, S.132, C.133 Ligands: TLA.3 1 PLIP interactions: 1 interactions with chain F Metal complexes: F:C.128 3CO.5: 5 residues within 4Å: Chain I: C.128, C.131, S.132, C.133 Ligands: TLA.6 1 PLIP interactions: 1 interactions with chain I Metal complexes: I:C.128 3CO.7: 5 residues within 4Å: Chain L: C.128, C.131, S.132, C.133 Ligands: TLA.8 1 PLIP interactions: 1 interactions with chain L Metal complexes: L:C.128

4 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.2: 12 residues within 4Å: Chain B: R.90, R.91, Q.94, N.95, Y.108, W.112 Chain C: S.108, C.131, S.132, C.133, R.136 Ligands: 3CO.1 11 PLIP interactions: 5 interactions with chain C, 6 interactions with chain B Hydrogen bonds: C:S.108, C:S.132, C:R.136, C:R.186, B:R.91, B:Q.94, B:N.95 Salt bridges: C:R.136, B:R.90, B:R.90, B:R.91 TLA.3: 12 residues within 4Å: Chain E: R.90, R.91, Q.94, N.95, Y.108, W.112 Chain F: S.108, C.131, S.132, C.133, R.136 Ligands: 3CO.4 12 PLIP interactions: 4 interactions with chain F, 8 interactions with chain E Hydrogen bonds: F:S.108, F:R.136, E:R.91, E:R.91, E:N.95, E:Y.108 Water bridges: F:R.186, E:N.95 Salt bridges: F:R.136, E:R.90, E:R.90, E:R.91 TLA.6: 12 residues within 4Å: Chain H: R.90, R.91, Q.94, N.95, Y.108, W.112 Chain I: S.108, C.131, S.132, C.133, R.136 Ligands: 3CO.5 10 PLIP interactions: 5 interactions with chain H, 5 interactions with chain I Hydrogen bonds: H:Q.94, H:N.95, I:S.108, I:S.132, I:S.132 Salt bridges: H:R.90, H:R.90, H:R.91, I:R.136 Water bridges: I:Y.134 TLA.8: 12 residues within 4Å: Chain K: R.90, R.91, Q.94, N.95, Y.108, W.112 Chain L: S.108, C.131, S.132, C.133, R.136 Ligands: 3CO.7 11 PLIP interactions: 5 interactions with chain L, 6 interactions with chain K Hydrogen bonds: L:S.108, L:S.132, L:R.136, K:Q.94, K:N.95, K:Y.108 Water bridges: L:Y.134 Salt bridges: L:R.136, K:R.90, K:R.90, K:R.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arakawa, T. et al., Structural Basis for Catalytic Activation of Thiocyanate Hydrolase Involving Metal-Ligated Cysteine Modification. J.Am.Chem.Soc. (2009)

Release Date

2007-08-28

Peptides

Thiocyanate hydrolase subunit alpha: ADGJ
Thiocyanate hydrolase subunit beta: BEHK
Thiocyanate hydrolase subunit gamma: CFIL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
D

G
G

J
J

B
B

E
E

H
H

K
K

C
C

F
F

I
I

L
L

Thiocyanate hydrolase subunit alpha

Thiocyanate hydrolase subunit beta

Thiocyanate hydrolase subunit gamma

Related Entries With Identical Sequence