SMTL ID : 2dxt.1

Crystal Structure Of Biotin Protein Ligase From Pyrococcus Horikoshii Complexed with ATP and Biotin, Mutation D104A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 15 residues within 4Å: Chain A: G.47, R.48, R.51, K.52, W.53, E.54, K.100, N.103, A.104, K.111, N.131, P.137, A.140, Y.227 Ligands: BTN.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:R.48, A:E.54, A:N.103, A:N.103, A:K.111, A:N.131, A:N.131, A:Y.227 Water bridges: A:K.100, A:K.100, A:K.100, A:K.100 Salt bridges: A:R.51, A:K.100, A:K.111, A:K.111, A:K.111 pi-Stacking: A:W.53, A:W.53 ATP.3: 14 residues within 4Å: Chain B: G.47, R.48, R.51, K.52, W.53, E.54, K.100, N.103, K.111, N.131, P.137, A.140, L.232 Ligands: BTN.4 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:R.48, B:E.54, B:N.103, B:N.103, B:K.111, B:N.131, B:N.131, B:L.232 Water bridges: B:R.48, B:R.51 Salt bridges: B:R.48, B:R.51, B:R.51, B:K.100, B:K.111, B:K.111, B:K.111 pi-Stacking: B:W.53, B:W.53

2 x BTN: BIOTIN(Non-covalent)

BTN.2: 19 residues within 4Å: Chain A: S.21, T.22, N.23, Q.42, G.45, H.46, G.47, R.48, W.53, L.62, S.63, N.103, K.111, G.114, V.115, L.116, I.128, G.129 Ligands: ATP.1 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:W.53, A:W.53, A:L.116 Hydrogen bonds: A:T.22, A:N.23, A:Q.42, A:Q.42, A:H.46, A:H.46, A:R.48, A:N.103 Salt bridges: A:K.111 BTN.4: 20 residues within 4Å: Chain B: S.21, T.22, N.23, Q.42, G.45, H.46, G.47, R.48, W.53, W.61, L.62, S.63, N.103, K.111, G.114, V.115, L.116, I.128, G.129 Ligands: ATP.3 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:W.53, B:W.53, B:L.116 Hydrogen bonds: B:T.22, B:N.23, B:Q.42, B:Q.42, B:H.46, B:H.46, B:R.48, B:N.103, B:V.115 Salt bridges: B:K.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bagautdinov, B. et al., Ligand Structures Of Biotin Protein Ligase From Pyrococcus Horikoshii Ot3. To be Published

Release Date

2007-03-01

Peptides

biotin--[acetyl-CoA-carboxylase] ligase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

biotin--[acetyl-CoA-carboxylase] ligase

Related Entries With Identical Sequence