SMTL ID : 2e18.1

Crystal structure of project PH0182 from Pyrococcus horikoshii OT3

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: E.95 Chain B: K.79 Ligands: IMD.5, IMD.6 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.95, A:E.95 ZN.2: 3 residues within 4Å: Chain A: M.1, E.202 Ligands: IMD.7 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.202, A:E.202 ZN.3: 3 residues within 4Å: Chain A: D.34, T.129, E.134 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.34, A:E.134, A:E.134, H2O.10, H2O.10 ZN.4: 1 residues within 4Å: Chain A: E.190 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.190, A:E.190, H2O.9, H2O.9 ZN.8: 3 residues within 4Å: Chain B: D.34, T.129, E.134 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:D.34, B:E.134, B:E.134, H2O.17, H2O.17 ZN.9: 1 residues within 4Å: Chain B: E.190 3 PLIP interactions: 1 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.190, H2O.17, H2O.17

3 x IMD: IMIDAZOLE(Non-covalent)

IMD.5: 7 residues within 4Å: Chain A: N.93, E.95 Chain B: K.79, V.80, I.81 Ligands: ZN.1, IMD.6 No protein-ligand interaction detected (PLIP) IMD.6: 3 residues within 4Å: Chain A: E.95 Ligands: ZN.1, IMD.5 No protein-ligand interaction detected (PLIP) IMD.7: 5 residues within 4Å: Chain A: M.1, E.202, R.206, L.221 Ligands: ZN.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.206 pi-Cation interactions: A:R.206

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shimizu, K. et al., Crystal structure of project PH0182 from Pyrococcus horikoshii OT3. To be Published

Release Date

2007-04-24

Peptides

NH(3)-dependent NAD(+) synthetase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NH(3)-dependent NAD(+) synthetase