SMTL ID : 2e1m.1

Crystal Structure of L-Glutamate Oxidase from Streptomyces sp. X-119-6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

hetero-oligomer

Ligands

6 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 5 residues within 4Å: Chain A: N.76, R.79, K.85 Chain C: D.91, Y.93 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain C Hydrogen bonds: A:N.76, C:D.91 Salt bridges: A:R.79, A:K.85 PO4.2: 3 residues within 4Å: Chain A: H.206 Chain E: Y.31, R.34 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:Y.31 Salt bridges: E:R.34, A:H.206 PO4.3: 8 residues within 4Å: Chain A: S.263, G.265, R.266, R.269, L.292, H.293 Chain F: T.102, P.103 6 PLIP interactions: 2 interactions with chain F, 4 interactions with chain A Hydrogen bonds: F:T.102, F:P.103, A:S.263, A:R.266, A:L.292 Salt bridges: A:R.269 PO4.5: 5 residues within 4Å: Chain D: N.76, R.79, K.85 Chain F: D.91, Y.93 4 PLIP interactions: 1 interactions with chain F, 3 interactions with chain D Hydrogen bonds: F:D.91, D:N.76 Salt bridges: D:R.79, D:K.85 PO4.6: 3 residues within 4Å: Chain B: Y.31, R.34 Chain D: H.206 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:Y.31 Salt bridges: B:R.34, D:H.206 PO4.7: 8 residues within 4Å: Chain C: T.102, P.103 Chain D: S.263, G.265, R.266, R.269, L.292, H.293 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain D Hydrogen bonds: C:P.103, D:S.263, D:R.266, D:L.292 Salt bridges: D:R.269

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.4: 35 residues within 4Å: Chain A: V.50, G.51, A.52, G.53, I.54, A.55, L.73, E.74, A.75, G.81, G.82, R.83, I.84, A.106, G.107, A.108, M.109, R.110, Q.338, R.339, M.340 Chain B: T.14, I.15, P.16, S.19 Chain C: Y.42, W.88, Y.93, E.97, G.124, E.125, A.132, W.133, I.134, A.137 16 PLIP interactions: 5 interactions with chain C, 10 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: C:W.88, C:E.97 Hydrogen bonds: C:E.125, C:W.133, C:I.134, A:A.55, A:A.75, A:R.83, A:M.109, A:R.110, A:R.110, A:M.340, A:M.340, B:S.19 Salt bridges: A:R.83, A:R.83 FAD.8: 35 residues within 4Å: Chain D: V.50, G.51, A.52, G.53, I.54, A.55, L.73, E.74, A.75, G.81, G.82, R.83, I.84, A.106, G.107, A.108, M.109, R.110, Q.338, R.339, M.340 Chain E: T.14, I.15, P.16, S.19 Chain F: Y.42, W.88, Y.93, E.97, G.124, E.125, A.132, W.133, I.134, A.137 16 PLIP interactions: 10 interactions with chain D, 5 interactions with chain F, 1 interactions with chain E Hydrogen bonds: D:A.55, D:A.75, D:R.83, D:M.109, D:R.110, D:R.110, D:M.340, D:M.340, F:E.125, F:W.133, F:I.134, E:S.19 Salt bridges: D:R.83, D:R.83 Hydrophobic interactions: F:W.88, F:E.97

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Arima, J. et al., Structural characterization of l-glutamate oxidase from Streptomyces sp. X-119-6. Febs J. (2009)

Release Date

2007-11-13

Peptides

L-glutamate oxidase: AD
L-glutamate oxidase: BE
L-glutamate oxidase: CF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

D
A

B
B

E
B

C
C

F
C

L-glutamate oxidase

L-glutamate oxidase

L-glutamate oxidase