SMTL ID : 2e26.1

Crystal structure of two repeat fragment of reelin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: D.223, H.278, N.372, S.374, N.376 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG-BMA.2: 6 residues within 4Å: Chain A: S.569, T.572, N.624, T.626, N.627, I.690 No protein-ligand interaction detected (PLIP)

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.3: 3 residues within 4Å: Chain A: I.199, N.200, K.203 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.199 Hydrogen bonds: A:N.200, A:K.203 NAG.4: 1 residues within 4Å: Chain A: N.324 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.324

4 x CA: CALCIUM ION(Non-covalent)

CA.5: 6 residues within 4Å: Chain A: N.577, N.579, S.604, L.606, D.712, N.713 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:N.577, A:S.604, A:L.606, A:D.712, H2O.2 CA.6: 5 residues within 4Å: Chain A: D.228, E.230, N.257, D.365, Q.366 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.228, A:E.230, A:N.257, A:D.365, H2O.3 CA.8: 4 residues within 4Å: Chain A: D.382, T.406, D.408, D.529 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.406, A:D.408, A:D.529, H2O.7, H2O.13 CA.9: 5 residues within 4Å: Chain A: T.16, D.18, E.48, S.50, D.180 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:T.16, A:D.18, A:E.48, A:S.50, H2O.16

2 x ZN: ZINC ION(Non-covalent)

ZN.7: 4 residues within 4Å: Chain A: E.452, E.454, R.513, H.515 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.452, A:E.454, A:H.515, H2O.13, H2O.15 ZN.10: 4 residues within 4Å: Chain A: Y.115, H.116, H.129, E.319 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.116, A:H.129, A:E.319

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.11: 4 residues within 4Å: Chain A: D.223, F.224, G.370, G.371 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.371 Water bridges: A:R.389, A:T.424

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yasui, N. et al., Structure of a receptor-binding fragment of reelin and mutational analysis reveal a recognition mechanism similar to endocytic receptors. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-05-22

Peptides

Reelin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Reelin