SMTL ID : 2e2r.1

Crystal structure of human estrogen-related receptor gamma ligand binding domain complex with bisphenol A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

homo-dimer

Ligands

2 x 2OH: 4,4'-PROPANE-2,2-DIYLDIPHENOL(Non-covalent)

2OH.1: 13 residues within 4Å: Chain A: L.53, A.57, E.60, M.91, L.94, R.101, Y.111, L.127, L.130, N.131, I.134, A.216, F.220 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.53, A:A.57, A:L.94, A:Y.111, A:L.127, A:A.216, A:F.220, A:F.220 Hydrogen bonds: A:L.94, A:R.101, A:N.131 Water bridges: A:R.101 pi-Stacking: A:Y.111 2OH.5: 13 residues within 4Å: Chain B: L.53, A.57, E.60, M.91, L.94, R.101, Y.111, L.127, L.130, N.131, I.134, A.216, F.220 14 PLIP interactions: 14 interactions with chain B Hydrophobic interactions: B:L.53, B:A.57, B:L.94, B:Y.111, B:L.127, B:A.216, B:F.220, B:F.220 Hydrogen bonds: B:L.94, B:R.101, B:Y.111, B:N.131 Water bridges: B:R.101 pi-Stacking: B:Y.111

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: K.224, G.227, V.229, P.230, M.231, L.236 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:K.224, A:V.229, A:M.231, A:M.231 Water bridges: A:G.227, A:V.229 GOL.3: 11 residues within 4Å: Chain A: D.107, E.108, L.109, M.117, D.118, E.119, S.122, L.128, N.131, N.132, L.135 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.107, A:L.109, A:M.117, A:S.122, A:L.128 Water bridges: A:E.119, A:E.119 GOL.4: 2 residues within 4Å: Chain A: K.175, V.179 2 PLIP interactions: 2 interactions with chain A Water bridges: A:D.178, A:D.178 GOL.6: 6 residues within 4Å: Chain B: K.224, G.227, V.229, P.230, M.231, L.236 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:K.224, B:V.229, B:M.231, B:M.231 Water bridges: B:G.227, B:V.229 GOL.7: 11 residues within 4Å: Chain B: D.107, E.108, L.109, M.117, D.118, E.119, S.122, L.128, N.131, N.132, L.135 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:D.107, B:L.109, B:M.117, B:S.122, B:L.128 Water bridges: B:E.119 GOL.8: 2 residues within 4Å: Chain B: K.175, V.179 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Matsushima, A. et al., Structural Evidence for Endocrine Disruptor Bisphenol A Binding to Human Nuclear Receptor ERR{gamma}. J.Biochem.(Tokyo) (2007)

Release Date

2007-09-11

Peptides

Estrogen-related receptor gamma: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Estrogen-related receptor gamma

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