SMTL ID : 2e2x.1

Sec14 Homology Module of Neurofibromin in complex with phosphatitylethanolamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

2 x PEV: (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE(Non-covalent)

PEV.1: 24 residues within 4Å: Chain A: Y.48, A.50, Y.79, I.81, V.83, L.85, N.92, R.93, F.94, L.99, W.102, F.103, F.106, Y.111, V.114, V.117, W.125, V.126, Y.129, L.137, L.140, R.145, L.146, L.213 31 PLIP interactions: 31 interactions with chain A Hydrophobic interactions: A:Y.48, A:Y.48, A:Y.48, A:A.50, A:Y.79, A:I.81, A:V.83, A:L.85, A:R.93, A:F.94, A:F.94, A:L.99, A:W.102, A:W.102, A:W.102, A:F.106, A:Y.111, A:V.114, A:W.125, A:V.126, A:Y.129, A:Y.129, A:L.137, A:L.140, A:L.140, A:L.146, A:L.213 Hydrogen bonds: A:Y.79, A:F.103, A:R.145 Salt bridges: A:R.145 PEV.2: 24 residues within 4Å: Chain B: Y.48, L.71, Y.79, I.81, V.83, L.85, R.93, F.94, L.99, W.102, F.103, Y.111, V.114, V.117, I.119, W.125, V.126, Y.129, T.130, L.137, G.139, L.140, R.145, L.213 31 PLIP interactions: 31 interactions with chain B Hydrophobic interactions: B:Y.48, B:Y.48, B:Y.48, B:L.71, B:Y.79, B:I.81, B:V.83, B:L.85, B:R.93, B:F.94, B:F.94, B:L.99, B:W.102, B:W.102, B:F.103, B:Y.111, B:V.114, B:I.119, B:W.125, B:V.126, B:Y.129, B:Y.129, B:T.130, B:L.137, B:L.140, B:L.140, B:L.213 Hydrogen bonds: B:F.103 Water bridges: B:R.145, B:R.145 Salt bridges: B:R.145

2 x POP: PYROPHOSPHATE 2-(Non-covalent)

POP.3: 2 residues within 4Å: Chain B: R.127, K.189 5 PLIP interactions: 5 interactions with chain B Water bridges: B:R.127, B:R.127 Salt bridges: B:R.127, B:K.189, B:K.189 POP.4: 4 residues within 4Å: Chain B: R.93, K.95, T.96, Y.132 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.96, B:Y.132 Salt bridges: B:R.93

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Welti, S. et al., The sec14 homology module of neurofibromin binds cellular glycerophospholipids: mass spectrometry and structure of a lipid complex. J.Mol.Biol. (2007)

Release Date

2007-10-02

Peptides

Neurofibromin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Neurofibromin