SMTL ID : 2e2y.1

Crystal Structure of F43W/H64D/V68I Myoglobin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: G.125, A.126, D.127 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:A.126, A:D.127 Water bridges: A:G.125, A:G.125, A:G.125 SO4.2: 2 residues within 4Å: Chain A: S.4, G.6 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.4, A:S.4, A:G.6 SO4.3: 4 residues within 4Å: Chain A: K.35, T.52, E.53, A.54 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.53, A:A.54 Water bridges: A:K.35, A:K.35 Salt bridges: A:K.35

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.4: 16 residues within 4Å: Chain A: T.40, K.43, W.44, T.68, I.69, A.72, L.73, L.90, S.93, H.94, H.98, I.100, Y.104, L.105, I.108, F.139 20 PLIP interactions: 19 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:W.44, A:W.44, A:T.68, A:I.69, A:A.72, A:L.90, A:I.100, A:I.100, A:Y.104, A:L.105, A:F.139 Hydrogen bonds: A:S.93 Water bridges: A:P.89, A:S.93 Salt bridges: A:H.94, A:H.98 pi-Stacking: A:W.44, A:H.98 Metal complexes: A:H.94, H2O.9

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 4 residues within 4Å: Chain A: A.58, S.59, E.60, D.61 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.60, A:D.61, A:D.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Watanabe, Y. et al., Reactivities of oxo and peroxo intermediates studied by hemoprotein mutants. Acc.Chem.Res. (2007)

Release Date

2007-10-23

Peptides

Myoglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Myoglobin