SMTL ID : 2e56.1

Crystal structure of human MD-2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: N.10, S.15, Q.140, P.141 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.10, A:S.15, A:Q.140 NAG.2: 2 residues within 4Å: Chain A: F.48, N.98 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.48 Hydrogen bonds: A:N.98

3 x MYR: MYRISTIC ACID(Non-covalent)

MYR.3: 7 residues within 4Å: Chain A: L.45, F.88, S.102, F.103, S.104 Ligands: MYR.4, MYR.5 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.45 Hydrogen bonds: A:S.104 MYR.4: 4 residues within 4Å: Chain A: E.76, F.135 Ligands: MYR.3, MYR.5 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:E.76, A:F.135 MYR.5: 9 residues within 4Å: Chain A: V.32, I.36, F.103, S.104, F.105, C.117, F.135 Ligands: MYR.3, MYR.4 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.32, A:I.36, A:F.103, A:F.103, A:F.135, A:F.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ohto, U. et al., Crystal structures of human MD-2 and its complex with antiendotoxic lipid IVa. Science (2007)

Release Date

2007-06-26

Peptides

Lymphocyte antigen 96: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lymphocyte antigen 96

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