SMTL ID : 2e5a.1

Crystal Structure of Bovine Lipoyltransferase in Complex with Lipoyl-AMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 5 residues within 4Å: Chain A: R.125, F.126, D.127, G.138, T.139 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:R.125, A:D.127, H2O.3

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 2 residues within 4Å: Chain A: H.218, H.220 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.218 Water bridges: A:L.221 Salt bridges: A:H.220 PO4.3: 2 residues within 4Å: Chain A: K.112, H.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.117 Salt bridges: A:K.112, A:H.117

1 x LAQ: 5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE(Non-covalent)

LAQ.4: 26 residues within 4Å: Chain A: W.40, R.73, G.78, T.79, V.80, Y.81, H.82, N.86, N.88, R.125, K.135, I.136, S.137, G.138, T.139, H.151, C.152, T.153, L.155, L.163, L.167, S.181, T.182, P.183, A.184, V.186 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:V.80, A:T.153 Hydrogen bonds: A:Y.81, A:Y.81, A:K.135, A:T.182, A:A.184 Water bridges: A:T.79, A:R.125, A:R.125, A:R.125, A:R.125, A:T.182 Salt bridges: A:R.125, A:K.135, A:K.135

1 x ACY: ACETIC ACID(Non-functional Binders)

ACY.5: 4 residues within 4Å: Chain A: D.99, R.100, M.101, F.126 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.126 Hydrogen bonds: A:R.100, A:M.101 Salt bridges: A:R.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fujiwara, K. et al., Crystal structure of bovine Lipoyltransferase in complex with lipoyl-AMP. J.Mol.Biol. (2007)

Release Date

2007-09-04

Peptides

Lipoyltransferase 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Lipoyltransferase 1

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