SMTL ID : 2e5m.1

Crystal structure of isocitrate dehydrogenase from Sulfolobus tokodaii strain 7

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 16 residues within 4Å: Chain A: I.35, K.96, P.98, L.99, T.101, N.111, E.327, H.330, G.331, T.332, A.333, K.335, Y.336, N.343, D.383, R.386 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:K.96, A:L.99, A:T.101, A:T.101, A:E.327, A:G.331, A:T.332, A:A.333, A:K.335, A:K.335, A:Y.336, A:N.343, A:N.343 Water bridges: A:Q.382 Salt bridges: A:K.335, A:R.386 NAP.2: 17 residues within 4Å: Chain B: I.35, P.98, L.99, E.100, T.101, N.111, E.327, H.330, G.331, T.332, A.333, K.335, Y.336, A.342, N.343, D.383, R.386 20 PLIP interactions: 20 interactions with chain B Hydrogen bonds: B:L.99, B:E.100, B:T.101, B:T.101, B:N.111, B:E.327, B:G.331, B:G.331, B:T.332, B:A.333, B:Y.336, B:N.343, B:N.343, B:R.386 Water bridges: B:E.327, B:E.327, B:Q.382, B:Q.382, B:Q.382 Salt bridges: B:K.335

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kondo, H. et al., Crystal Structures of the Putative Isocitrate Dehydrogenase fromSulfolobus tokodaiiStrain 7 in the Apo and NADP+-Bound Forms. Archaea (2018)

Release Date

2008-01-15

Peptides

409aa long hypothetical NADP-dependent isocitrate dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

409aa long hypothetical NADP-dependent isocitrate dehydrogenase

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