SMTL ID : 2e5y.1

Epsilon subunit and ATP complex of F1F0-ATP synthase from the Thermophilic Bacillus PS3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.92 Å

Oligo State

homo-dimer

Ligands

2 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.1: 14 residues within 4Å: Chain A: D.12, A.81, A.82, E.83, D.87, I.88, D.89, R.92, A.93, R.99, R.122, R.126 Chain B: K.114, R.115 33 PLIP interactions: 29 interactions with chain A, 4 interactions with chain B Hydrogen bonds: A:D.12, A:D.12, A:A.82, A:D.89, A:D.89, A:R.92, A:R.92, B:R.115 Water bridges: A:S.64, A:S.64, A:A.82, A:R.92, A:R.99, A:R.99, A:R.99, A:R.99, A:R.99, A:R.122, A:R.122, A:R.126, A:R.126, A:R.126, A:R.126 Salt bridges: A:R.92, A:R.99, A:R.122, A:R.122, A:R.126, A:R.126, B:K.114, B:K.114, B:R.115 pi-Cation interactions: A:R.92 ATP.2: 11 residues within 4Å: Chain A: R.115 Chain B: E.83, D.87, I.88, D.89, R.92, A.93, A.96, R.99, R.122, R.126 32 PLIP interactions: 25 interactions with chain B, 7 interactions with chain A Hydrogen bonds: B:E.83, B:D.89, B:D.89, B:R.92, B:R.92 Water bridges: B:D.12, B:S.64, B:A.82, B:A.82, B:R.92, B:R.99, B:R.99, B:R.99, B:R.99, B:R.122, B:R.122, B:R.126, B:R.126, A:R.115, A:R.115, A:R.115, A:R.115, A:R.115 Salt bridges: B:R.92, B:R.99, B:R.122, B:R.122, B:R.126, B:R.126, A:R.115, A:R.115 pi-Cation interactions: B:R.92

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yagi, H. et al., Structures of the thermophilic F1-ATPase {varepsilon} subunit suggesting ATP-regulated arm motion of its C-terminal domain in F1. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-07-10

Peptides

ATP synthase epsilon chain: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ATP synthase epsilon chain

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