SMTL ID : 2e69.3 (2 other biounits)

Crystal structure of the stationary phase survival protein SurE from Thermus thermophilus HB8 in complex with sulfate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-octamer

Ligands

28 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: D.8, N.96, N.100, S.108, G.109, T.110 Ligand excluded by PLIP SO4.2: 7 residues within 4Å: Chain A: G.102, H.103, S.178, V.179, R.180, Y.182, R.214 Ligand excluded by PLIP SO4.3: 1 residues within 4Å: Chain A: R.180 Ligand excluded by PLIP SO4.4: 3 residues within 4Å: Chain A: R.228, L.229, D.230 Ligand excluded by PLIP SO4.5: 4 residues within 4Å: Chain A: T.235, R.236, P.239, T.240 Ligand excluded by PLIP SO4.7: 6 residues within 4Å: Chain B: D.8, N.96, N.100, S.108, G.109, T.110 Ligand excluded by PLIP SO4.8: 7 residues within 4Å: Chain B: G.102, H.103, S.178, V.179, R.180, Y.182, R.214 Ligand excluded by PLIP SO4.9: 3 residues within 4Å: Chain B: R.180, P.204, R.214 Ligand excluded by PLIP SO4.10: 5 residues within 4Å: Chain A: I.45, Q.116 Chain B: H.103, Y.182, P.202 Ligand excluded by PLIP SO4.12: 6 residues within 4Å: Chain C: D.8, N.96, N.100, S.108, G.109, T.110 Ligand excluded by PLIP SO4.13: 7 residues within 4Å: Chain C: G.102, H.103, S.178, V.179, R.180, Y.182, R.214 Ligand excluded by PLIP SO4.14: 6 residues within 4Å: Chain D: D.8, N.96, N.100, S.108, G.109, T.110 Ligand excluded by PLIP SO4.15: 7 residues within 4Å: Chain D: G.102, H.103, S.178, V.179, R.180, Y.182, R.214 Ligand excluded by PLIP SO4.16: 1 residues within 4Å: Chain D: R.180 Ligand excluded by PLIP SO4.17: 6 residues within 4Å: Chain E: D.8, N.96, N.100, S.108, G.109, T.110 Ligand excluded by PLIP SO4.18: 7 residues within 4Å: Chain E: G.102, H.103, S.178, V.179, R.180, Y.182, R.214 Ligand excluded by PLIP SO4.19: 1 residues within 4Å: Chain E: R.180 Ligand excluded by PLIP SO4.20: 3 residues within 4Å: Chain E: R.228, L.229, D.230 Ligand excluded by PLIP SO4.21: 4 residues within 4Å: Chain E: T.235, R.236, P.239, T.240 Ligand excluded by PLIP SO4.23: 6 residues within 4Å: Chain F: D.8, N.96, N.100, S.108, G.109, T.110 Ligand excluded by PLIP SO4.24: 7 residues within 4Å: Chain F: G.102, H.103, S.178, V.179, R.180, Y.182, R.214 Ligand excluded by PLIP SO4.25: 3 residues within 4Å: Chain F: R.180, P.204, R.214 Ligand excluded by PLIP SO4.26: 5 residues within 4Å: Chain E: I.45, Q.116 Chain F: H.103, Y.182, P.202 Ligand excluded by PLIP SO4.28: 6 residues within 4Å: Chain G: D.8, N.96, N.100, S.108, G.109, T.110 Ligand excluded by PLIP SO4.29: 7 residues within 4Å: Chain G: G.102, H.103, S.178, V.179, R.180, Y.182, R.214 Ligand excluded by PLIP SO4.30: 6 residues within 4Å: Chain H: D.8, N.96, N.100, S.108, G.109, T.110 Ligand excluded by PLIP SO4.31: 7 residues within 4Å: Chain H: G.102, H.103, S.178, V.179, R.180, Y.182, R.214 Ligand excluded by PLIP SO4.32: 1 residues within 4Å: Chain H: R.180 Ligand excluded by PLIP

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 7 residues within 4Å: Chain A: S.24, G.27, E.28, V.29, H.64, F.65, P.66 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.24, A:V.29, A:V.29 Water bridges: A:H.64 GOL.11: 6 residues within 4Å: Chain B: E.28, V.29, H.64, F.65, P.66 Chain F: P.55 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:V.29 GOL.22: 7 residues within 4Å: Chain E: S.24, G.27, E.28, V.29, H.64, F.65, P.66 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:S.24, E:V.29, E:V.29 Water bridges: E:H.64, E:H.64 GOL.27: 6 residues within 4Å: Chain B: P.55 Chain F: E.28, V.29, H.64, F.65, P.66 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:V.29

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Iwasaki, W. et al., Crystal Structure of the Stationary Phase Survival Protein SurE with Metal Ion and AMP. J.Mol.Biol. (2007)

Release Date

2007-08-28

Peptides

5'-nucleotidase surE: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
A

F
B

G
C

H
D

5'-nucleotidase surE

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