SMTL ID : 2e87.1

Crystal structure of hypothetical GTP-binding protein PH1320 from Pyrococcus horikoshii OT3, in complex with GDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.70, L.71, S.72, H.92 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:L.71, A:S.72 Salt bridges: A:H.92 SO4.2: 4 residues within 4Å: Chain A: T.10, R.154, E.155, K.158 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.155 Salt bridges: A:R.154, A:K.158 SO4.3: 2 residues within 4Å: Chain A: P.75, K.76 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.76 Water bridges: A:F.77, A:Y.245 SO4.4: 4 residues within 4Å: Chain A: L.85, Y.149, K.152, A.153 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.152

1 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.5: 15 residues within 4Å: Chain A: H.175, P.176, N.177, V.178, G.179, K.180, S.181, T.182, N.288, K.289, D.291, V.292, S.316, A.317, L.318 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:N.177, A:V.178, A:G.179, A:K.180, A:S.181, A:S.181, A:T.182, A:T.182, A:N.288, A:K.289, A:K.289, A:L.318 Water bridges: A:K.180 Salt bridges: A:K.180, A:D.291

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kukimoto-Niino, M. et al., Crystal structure of hypothetical GTP-binding protein PH1320 from Pyrococcus horikoshii OT3, in complex with GDP. To be Published

Release Date

2007-07-24

Peptides

Hypothetical protein PH1320: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hypothetical protein PH1320