SMTL ID : 2e9l.1

Crystal Structure of human Cytosolic Neutral beta-Glycosylceramidase (Klotho-related Prote:KLrP) complex with Glucose and fatty acids

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.1: 14 residues within 4Å: Chain A: Q.17, H.120, N.164, E.165, F.225, Q.307, Y.309, W.345, E.373, W.417, E.424, W.425, F.433 Ligands: PLM.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:Q.17, A:Q.17, A:H.120, A:H.120, A:N.164, A:E.165 Water bridges: A:W.345, A:N.422, A:E.424

2 x PLM: PALMITIC ACID(Non-covalent)

PLM.2: 14 residues within 4Å: Chain A: N.167, V.168, V.171, G.190, A.194, F.249, H.250, L.253, I.326, W.345, E.424, W.425 Ligands: BGC.1, OLA.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:N.167, A:V.168, A:V.168, A:V.171, A:A.194, A:H.250, A:L.253, A:I.326, A:W.345 Water bridges: A:W.345, A:E.424, A:E.424 PLM.4: 5 residues within 4Å: Chain A: Q.279, G.280, Y.281, K.321, G.322 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.281, A:Y.281

1 x OLA: OLEIC ACID(Non-covalent)

OLA.3: 10 residues within 4Å: Chain A: L.176, A.246, H.250, R.312, I.326, L.327, I.332, F.334, W.345 Ligands: PLM.2 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.176, A:H.250, A:I.326, A:F.334, A:F.334, A:W.345

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: N.101, K.102, D.105 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.101, A:K.102 GOL.6: 8 residues within 4Å: Chain A: L.127, Q.130, G.131, G.132, S.135, A.137, I.138, S.141 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.130, A:G.132, A:G.132, A:S.135, A:S.135, A:A.137, A:I.138, A:S.141 GOL.7: 4 residues within 4Å: Chain A: E.61, K.64, Q.68, R.447 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.61, A:Q.68

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hayashi, Y. et al., Klotho-related protein is a novel cytosolic neutral beta-glycosylceramidase. J.Biol.Chem. (2007)

Release Date

2007-09-11

Peptides

Cytosolic beta-glucosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytosolic beta-glucosidase

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