SMTL ID : 2e9m.1

Crystal Structure of human Cytosolic Neutral beta-Glycosylceramidase (Klotho-related Prote:KLrP) complex with Galactose and fatty acids

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x GAL: beta-D-galactopyranose(Non-covalent)

GAL.1: 14 residues within 4Å: Chain A: Q.17, H.120, F.121, N.164, E.165, F.225, Q.307, Y.309, W.345, E.373, W.417, E.424, W.425 Ligands: PLM.2 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:Q.17, A:Q.17, A:H.120, A:N.164, A:E.373, A:E.424 Water bridges: A:N.422 Salt bridges: A:H.120

1 x PLM: PALMITIC ACID(Non-covalent)

PLM.2: 15 residues within 4Å: Chain A: N.167, V.168, S.170, V.171, M.172, G.190, Y.191, F.225, F.249, H.250, L.253, F.254, W.345 Ligands: GAL.1, OLA.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:N.167, A:V.168, A:V.171, A:F.225, A:F.225, A:H.250, A:L.253, A:F.254, A:W.345 Water bridges: A:N.426

1 x OLA: OLEIC ACID(Non-covalent)

OLA.3: 9 residues within 4Å: Chain A: L.176, A.246, H.250, R.312, L.327, I.332, F.334, W.345 Ligands: PLM.2 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.176, A:H.250, A:L.327, A:I.332, A:F.334, A:F.334, A:W.345

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hayashi, Y. et al., Klotho-related protein is a novel cytosolic neutral beta-glycosylceramidase. J.Biol.Chem. (2007)

Release Date

2007-09-11

Peptides

Cytosolic beta-glucosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cytosolic beta-glucosidase

Related Entries With Identical Sequence