SMTL ID : 2e9q.2 (1 other biounit)

Recombinant pro-11S globulin of pumpkin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-12-mer

Ligands

12 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 3 residues within 4Å: Chain A: P.37, V.38, R.40 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.38 Salt bridges: A:R.40 PO4.3: 3 residues within 4Å: Chain B: P.37, V.38, R.40 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:V.38 Salt bridges: B:R.40 PO4.5: 3 residues within 4Å: Chain C: P.37, V.38, R.40 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:V.38 Salt bridges: C:R.40 PO4.7: 3 residues within 4Å: Chain D: P.37, V.38, R.40 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:V.38 Salt bridges: D:R.40 PO4.9: 3 residues within 4Å: Chain E: P.37, V.38, R.40 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:V.38 Salt bridges: E:R.40 PO4.11: 3 residues within 4Å: Chain F: P.37, V.38, R.40 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:V.38 Salt bridges: F:R.40 PO4.13: 3 residues within 4Å: Chain G: P.37, V.38, R.40 2 PLIP interactions: 2 interactions with chain G Hydrogen bonds: G:V.38 Salt bridges: G:R.40 PO4.15: 3 residues within 4Å: Chain H: P.37, V.38, R.40 2 PLIP interactions: 2 interactions with chain H Hydrogen bonds: H:V.38 Salt bridges: H:R.40 PO4.17: 3 residues within 4Å: Chain I: P.37, V.38, R.40 2 PLIP interactions: 2 interactions with chain I Hydrogen bonds: I:V.38 Salt bridges: I:R.40 PO4.19: 3 residues within 4Å: Chain J: P.37, V.38, R.40 2 PLIP interactions: 2 interactions with chain J Hydrogen bonds: J:V.38 Salt bridges: J:R.40 PO4.21: 3 residues within 4Å: Chain K: P.37, V.38, R.40 2 PLIP interactions: 2 interactions with chain K Hydrogen bonds: K:V.38 Salt bridges: K:R.40 PO4.23: 3 residues within 4Å: Chain L: P.37, V.38, R.40 2 PLIP interactions: 2 interactions with chain L Hydrogen bonds: L:V.38 Salt bridges: L:R.40

12 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: V.335, H.338, K.387, W.396 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain B: V.335, H.338, K.387, W.396 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain C: V.335, H.338, K.387, W.396 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain D: V.335, H.338, K.387, W.396 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain E: V.335, H.338, K.387, W.396 Ligand excluded by PLIP CL.12: 4 residues within 4Å: Chain F: V.335, H.338, K.387, W.396 Ligand excluded by PLIP CL.14: 4 residues within 4Å: Chain G: V.335, H.338, K.387, W.396 Ligand excluded by PLIP CL.16: 4 residues within 4Å: Chain H: V.335, H.338, K.387, W.396 Ligand excluded by PLIP CL.18: 4 residues within 4Å: Chain I: V.335, H.338, K.387, W.396 Ligand excluded by PLIP CL.20: 4 residues within 4Å: Chain J: V.335, H.338, K.387, W.396 Ligand excluded by PLIP CL.22: 4 residues within 4Å: Chain K: V.335, H.338, K.387, W.396 Ligand excluded by PLIP CL.24: 4 residues within 4Å: Chain L: V.335, H.338, K.387, W.396 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tandang-Silvas, M.R. et al., Conservation and divergence on plant seed 11S globulins based on crystal structures. Biochim.Biophys.Acta (2010)

Release Date

2008-02-26

Peptides

11S globulin subunit beta: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

11S globulin subunit beta

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