SMTL ID : 2e9r.1

Foot-and-mouth disease virus RNA-dependent RNA polymerase in complex with a template-primer RNA and with ribavirin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.81 Å

Oligo State

monomer

Ligands

1 x C- A- U- G- G- G- C- C- C: 5'-R(*CP*AP*UP*GP*GP*GP*CP*CP*C)-3'(Non-covalent)

C-A-U-G-G-G-C-C-C.1: 42 residues within 4Å: Chain A: R.17, K.20, G.107, L.108, D.109, T.115, A.116, R.128, F.162, L.163, K.164, D.165, V.181, D.182, V.183, L.184, I.189, R.193, H.204, V.215, G.216, C.217, N.218, S.298, G.299, C.300, S.301, A.302, T.303, S.304, Y.336, R.416, E.422, S.426, R.461 Ligands: G-G-G-C-C-C.2, G-G-G-C-C-C.2, G-G-G-C-C-C.2, G-G-G-C-C-C.2, G-G-G-C-C-C.2, G-G-G-C-C-C.2, RTP.4 Protein-ligand interaction information (PLIP) not available

1 x G- G- G- C- C- C: 5'-R(*CP*CP*C*GP*GP*GP*CP*CP*C)-3'(Non-covalent)

G-G-G-C-C-C.2: 26 residues within 4Å: Chain A: D.114, S.304, Y.336, D.338, D.339, L.386, K.387, R.388, M.403, T.407, I.411, R.416, T.419, E.422, K.423, S.426, V.427, L.430 Ligands: C-A-U-G-G-G-C-C-C.1, C-A-U-G-G-G-C-C-C.1, C-A-U-G-G-G-C-C-C.1, C-A-U-G-G-G-C-C-C.1, C-A-U-G-G-G-C-C-C.1, C-A-U-G-G-G-C-C-C.1, C-A-U-G-G-G-C-C-C.1, RTP.4 Protein-ligand interaction information (PLIP) not available

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.238, V.239, D.339, T.384 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.238, A:D.339, H2O.6, H2O.7

1 x RTP: RIBAVIRIN TRIPHOSPHATE(Non-covalent)

RTP.4: 14 residues within 4Å: Chain A: R.179, Y.241, S.242, A.243, F.244, D.245, S.298, G.299, T.303, N.307, D.338 Ligands: C-A-U-G-G-G-C-C-C.1, C-A-U-G-G-G-C-C-C.1, G-G-G-C-C-C.2 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:A.243, A:F.244, A:D.245, A:G.299, A:T.303, A:N.307, A:D.338 Salt bridges: A:K.172, A:R.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferrer-Orta, C. et al., Sequential structures provide insights into the fidelity of RNA replication. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-06-26

Peptides

RNA-dependent RNA polymerase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
X

RNA-dependent RNA polymerase

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