SMTL ID : 2e9w.1

Crystal structure of the extracellular domain of Kit in complex with stem cell factor (SCF)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

hetero-2-2-mer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 1 residues within 4Å: Chain A: N.258 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.258 NAG.2: 2 residues within 4Å: Chain A: Y.266, N.275 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.275 NAG.3: 1 residues within 4Å: Chain A: N.327 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.327 NAG.4: 2 residues within 4Å: Chain B: Y.266, N.268 No protein-ligand interaction detected (PLIP) NAG.5: 2 residues within 4Å: Chain B: A.274, N.275 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:N.275 Hydrogen bonds: B:N.275 NAG.6: 1 residues within 4Å: Chain B: N.327 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yuzawa, S. et al., Structural Basis for Activation of the Receptor Tyrosine Kinase KIT by Stem Cell Factor. Cell(Cambridge,Mass.) (2007)

Release Date

2007-08-07

Peptides

Mast/stem cell growth factor receptor: AB
Kit ligand: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Mast/stem cell growth factor receptor

Kit ligand

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