SMTL ID : 2eav.1

Crystal structure of the C-terminal peptidoglycan-binding domain of human peptidoglycan recognition protein Ibeta

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

6 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 4 residues within 4Å: Chain A: H.162 Chain B: C.2, D.120, Q.123 3 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:D.120, A:H.162, H2O.127 NI.2: 3 residues within 4Å: Chain A: C.2, D.120 Chain B: H.162 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Metal complexes: A:D.120, B:H.162 NI.3: 3 residues within 4Å: Chain B: I.31, H.140, S.148 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.140, H2O.93 NI.4: 1 residues within 4Å: Chain B: G.91 No protein-ligand interaction detected (PLIP) NI.5: 2 residues within 4Å: Chain A: H.165 Chain B: E.116 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:E.116, B:E.116 NI.6: 3 residues within 4Å: Chain A: E.116 Chain B: F.163, H.165 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, S. et al., Structural insights into the bactericidal mechanism of human peptidoglycan recognition proteins. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-09-18

Peptides

Peptidoglycan recognition protein-I-beta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peptidoglycan recognition protein-I-beta