SMTL ID : 2eax.1

Crystal structure of human PGRP-IBETAC in complex with glycosamyl muramyl pentapeptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-trimer

Ligands

1 x ALA- FGA- LYS- DAL- DAL: GLYCOSAMYL MURAMYL PENTAPEPTIDE(Non-covalent)

ALA-FGA-LYS-DAL-DAL.1: 13 residues within 4Å: Chain C: Y.54, K.59, Q.84, S.86, S.87, T.88, P.89, G.90, Y.91, D.92, D.93, A.143 Ligands: AMV-NAG.2 13 PLIP interactions: 13 interactions with chain C Hydrophobic interactions: C:Y.54, C:P.89 Hydrogen bonds: C:Y.54, C:K.59, C:Q.84, C:G.90, C:Y.91, C:D.92, C:D.92, C:D.93, C:D.93 Water bridges: C:R.144, C:R.144

1 x AMV- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranoside(Non-covalent)

AMV-NAG.2: 9 residues within 4Å: Chain C: H.31, T.32, F.53, Y.54, Y.65, R.144, T.145, S.147 Ligands: ALA-FGA-LYS-DAL-DAL.1 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:T.32, C:Y.54, C:Y.65, C:L.146, C:S.147 Water bridges: C:T.145

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, S. et al., Structural insights into the bactericidal mechanism of human peptidoglycan recognition proteins. Proc.Natl.Acad.Sci.Usa (2007)

Release Date

2007-10-02

Peptides

Peptidoglycan recognition protein-I-beta: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Peptidoglycan recognition protein-I-beta